View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20676_low_11 (Length: 237)
Name: NF20676_low_11
Description: NF20676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20676_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 33537360 - 33537139
Alignment:
| Q |
1 |
tttactctattggtgtcactattattaccgttatctgcatccatagttatatttattagaattcaacaaaattctgtcaaaaatagttatataccaacaa |
100 |
Q |
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| T |
33537360 |
tttactctattggtgtcactattattaccgttatctgcatccatagttatatttattagaattcaacaaaattctgtcaaaaatagttatataccaacaa |
33537261 |
T |
|
| Q |
101 |
catgnnnnnnngttgaaattattgttacttgttaggcaagtctattttgcaacttctttaacattgtacactagtctaggattaaatataaataccataa |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33537260 |
catgaaaaaaagttgaaattattgttacttgttaggcaagtctattttgcaacttctttaacattgtacactagtctaggattaaatataaataccataa |
33537161 |
T |
|
| Q |
201 |
cttcttttaacataattgtttt |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
33537160 |
cttcttttaacataattgtttt |
33537139 |
T |
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