View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20676_low_3 (Length: 404)

Name: NF20676_low_3
Description: NF20676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20676_low_3
NF20676_low_3
[»] chr7 (1 HSPs)
chr7 (20-397)||(40834860-40835233)
[»] chr5 (4 HSPs)
chr5 (63-150)||(2649226-2649313)
chr5 (65-150)||(35229894-35229979)
chr5 (283-357)||(2649402-2649476)
chr5 (290-378)||(35230121-35230209)
[»] chr8 (2 HSPs)
chr8 (283-365)||(41037342-41037424)
chr8 (48-148)||(41037813-41037913)
[»] chr4 (4 HSPs)
chr4 (290-381)||(21793805-21793896)
chr4 (60-150)||(4481881-4481971)
chr4 (290-357)||(4482614-4482681)
chr4 (35-153)||(21794001-21794119)
[»] chr1 (2 HSPs)
chr1 (282-381)||(42796516-42796615)
chr1 (33-153)||(42798095-42798215)
[»] chr2 (2 HSPs)
chr2 (290-396)||(40207061-40207167)
chr2 (96-155)||(40206919-40206978)
[»] chr3 (1 HSPs)
chr3 (31-133)||(55221063-55221165)


Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 20 - 397
Target Start/End: Original strand, 40834860 - 40835233
Alignment:
Q  20 ccatgctttctcattgttgtaaatcacagcagctccaaagcttctagcagggttaataccagttccagtgataggaatagtagcaaggtgaaccataaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40834860 ccatgctttctcattgttgtaaatcacagcagctccaaagcttctagcagggttaataccagttccagtgataggaatagtagcaaggtgaaccataaac 40834959  T
Q  120 actgcaaacccaattggaagtggtgccaaaacctatacacaacaaaaccaaacaataaaaatatacaacattaattaaactttaaagtactattttcttt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    |||||||||||||||||||||||    
T  40834960 actgcaaacccaattggaagtggtgccaaaacctatacacaacaaaaccaaacaataaaaatacacaacatta----aactttaaagtactattttcttt 40835055  T
Q  220 tcttagtctaaaaaagaattagaaaagaaggaaagtacaaaaataagaattaaggagtacgtaacatactggaacatgagagtctctagcacttcttttg 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  40835056 tcttagtctaaaaaagaattagaaaagaaggaaagtacaaaaataagaattaaggagtacgtaacatactggaacatgagagtctctagcatttcttttg 40835155  T
Q  320 ggatctgtggcagagaacaccgtgtaaacaagaacaaaggttccaattatttcagcacctaacccagttcctttgcta 397  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40835156 ggatctgtggcagagaacacggtgtaaacaagaacaaaggttccaattatttcagcacctaacccagttcctttgcta 40835233  T

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Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 63 - 150
Target Start/End: Original strand, 2649226 - 2649313
Alignment:
Q  63 ctagcagggttaataccagttccagtgataggaatagtagcaaggtgaaccataaacactgcaaacccaattggaagtggtgccaaaa 150  Q
    ||||| |||||||| ||||||||||| || ||||| ||||| | |||||||| |||||| ||||||||||||||||| ||||||||||    
T  2649226 ctagctgggttaatgccagttccagtaatgggaattgtagccaagtgaaccaaaaacacagcaaacccaattggaagaggtgccaaaa 2649313  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 150
Target Start/End: Original strand, 35229894 - 35229979
Alignment:
Q  65 agcagggttaataccagttccagtgataggaatagtagcaaggtgaaccataaacactgcaaacccaattggaagtggtgccaaaa 150  Q
    |||||||||||||||||||||||| || || ||||| || | ||||||||  ||||| || ||||||||||| | |||||||||||    
T  35229894 agcagggttaataccagttccagtaattgggatagtggccaagtgaaccaagaacacagcgaacccaattggcaatggtgccaaaa 35229979  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 357
Target Start/End: Original strand, 2649402 - 2649476
Alignment:
Q  283 acatactggaacatgagagtctctagcacttcttttgggatctgtggcagagaacaccgtgtaaacaagaacaaa 357  Q
    |||||| ||||| ||||||||||| ||| |||| |||| ||| ||||||||||| || ||||| |||||||||||    
T  2649402 acataccggaacgtgagagtctcttgcatttctcttggcatcagtggcagagaagacagtgtagacaagaacaaa 2649476  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 378
Target Start/End: Original strand, 35230121 - 35230209
Alignment:
Q  290 ggaacatgagagtctctagcacttcttttgggatctgtggcagagaacaccgtgtaaacaagaacaaaggttccaattatttcagcacc 378  Q
    |||||||||||||||||||| || | ||| | ||| ||||| ||||| || |||||||||||||  || || ||||  |||||||||||    
T  35230121 ggaacatgagagtctctagcgctacgtttagcatcggtggctgagaagacggtgtaaacaagaatgaaagtgccaacaatttcagcacc 35230209  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 283 - 365
Target Start/End: Complemental strand, 41037424 - 41037342
Alignment:
Q  283 acatactggaacatgagagtctctagcacttcttttgggatctgtggcagagaacaccgtgtaaacaagaacaaaggttccaa 365  Q
    |||||| ||||||||||||||||||||| |||| |||| ||| || |||||||| || ||||| |||||||||||||| ||||    
T  41037424 acatacaggaacatgagagtctctagcatttctcttggcatcagtagcagagaaaacagtgtagacaagaacaaaggtaccaa 41037342  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 148
Target Start/End: Complemental strand, 41037913 - 41037813
Alignment:
Q  48 gcagctccaaagcttctagcagggttaataccagttccagtgataggaatagtagcaaggtgaaccataaacactgcaaacccaattggaagtggtgcca 147  Q
    ||||||||||  || ||||| |||||||| || ||||| ||||| ||||| ||||| | ||| ||||  ||||| ||||||||||| ||||| || ||||    
T  41037913 gcagctccaagactcctagctgggttaatgcccgttcctgtgattggaattgtagccaagtggaccaagaacacagcaaacccaatgggaagaggagcca 41037814  T
Q  148 a 148  Q
    |    
T  41037813 a 41037813  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 381
Target Start/End: Complemental strand, 21793896 - 21793805
Alignment:
Q  290 ggaacatgagagtctctagcacttcttttgggatctgtggcagagaacaccgtgtaaacaagaacaaaggttccaattatttcagcacctaa 381  Q
    |||||||| ||||| |||||  | || || ||||| ||||||||||| || ||||| |||||||||||||| ||||| ||||||||||||||    
T  21793896 ggaacatgggagtccctagcgttcctcttaggatcagtggcagagaagacagtgtagacaagaacaaaggtaccaatgatttcagcacctaa 21793805  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 150
Target Start/End: Original strand, 4481881 - 4481971
Alignment:
Q  60 cttctagcagggttaataccagttccagtgataggaatagtagcaaggtgaaccataaacactgcaaacccaattggaagtggtgccaaaa 150  Q
    |||||||| |||||||||||||| || || || ||||| ||||| |  || |||| |||||| ||||| |||||||| |||||||||||||    
T  4481881 cttctagctgggttaataccagtccctgtaattggaattgtagccaaatgcaccaaaaacacagcaaatccaattggcagtggtgccaaaa 4481971  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 290 - 357
Target Start/End: Original strand, 4482614 - 4482681
Alignment:
Q  290 ggaacatgagagtctctagcacttcttttgggatctgtggcagagaacaccgtgtaaacaagaacaaa 357  Q
    |||||||| |||||||| ||| |||| |||| ||| || |||||||| || |||||||||||||||||    
T  4482614 ggaacatgggagtctcttgcatttctcttggcatcagtagcagagaagacagtgtaaacaagaacaaa 4482681  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 153
Target Start/End: Complemental strand, 21794119 - 21794001
Alignment:
Q  35 gttgtaaatcacagcagctccaaagcttctagcagggttaataccagttccagtgataggaatagtagcaaggtgaaccataaacactgcaaacccaatt 134  Q
    |||||| ||||| || | ||| || ||||| || ||||||||||| || || || |  || |||||||| | ||||||||| || || ||||| |||||     
T  21794119 gttgtagatcacggctgatccgaaacttcttgccgggttaataccggtgccggtaacggggatagtagccaagtgaaccatgaaaacagcaaatccaatg 21794020  T
Q  135 ggaagtggtgccaaaacct 153  Q
    |||||||||||||||||||    
T  21794019 ggaagtggtgccaaaacct 21794001  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 282 - 381
Target Start/End: Complemental strand, 42796615 - 42796516
Alignment:
Q  282 aacatactggaacatgagagtctctagcacttcttttgggatctgtggcagagaacaccgtgtaaacaagaacaaaggttccaattatttcagcacctaa 381  Q
    ||||||| || ||||| || |||||||||||||| || ||||| ||||||||||| || |||||||| | ||||||||| ||||  || |||||||||||    
T  42796615 aacataccggcacatgtgaatctctagcacttctcttaggatcagtggcagagaaaacggtgtaaaccaaaacaaaggtaccaacaatctcagcacctaa 42796516  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 153
Target Start/End: Complemental strand, 42798215 - 42798095
Alignment:
Q  33 ttgttgtaaatcacagcagctccaaagcttctagcagggttaataccagttccagtgataggaatagtagcaaggtgaaccataaacactgcaaacccaa 132  Q
    |||||||| || |||||||  ||||  ||||||||||| || || ||||| |||||||  || || || || |  |||||||| || || ||||| ||||    
T  42798215 ttgttgtagataacagcagaaccaagacttctagcaggattgatgccagtgccagtgactgggatggttgccaaatgaaccatgaatacagcaaagccaa 42798116  T
Q  133 ttggaagtggtgccaaaacct 153  Q
    | |||||||||||||||||||    
T  42798115 tgggaagtggtgccaaaacct 42798095  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 290 - 396
Target Start/End: Original strand, 40207061 - 40207167
Alignment:
Q  290 ggaacatgagagtctctagcacttcttttgggatctgtggcagagaacaccgtgtaaacaagaacaaaggttccaattatttcagcacctaacccagttc 389  Q
    |||||||| || || ||||||||||| || ||||| || |||||||| || ||||| || | ||||||||| ||||| ||||||||||||||  |||| |    
T  40207061 ggaacatgggaatccctagcacttctcttaggatcagtagcagagaaaacagtgtagaccaaaacaaaggtaccaataatttcagcacctaaagcagtgc 40207160  T
Q  390 ctttgct 396  Q
    |||||||    
T  40207161 ctttgct 40207167  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 155
Target Start/End: Original strand, 40206919 - 40206978
Alignment:
Q  96 atagtagcaaggtgaaccataaacactgcaaacccaattggaagtggtgccaaaacctat 155  Q
    |||||||| | ||||||||| ||||| ||||| ||||| |||||||||||||| ||||||    
T  40206919 atagtagccaagtgaaccatgaacacagcaaatccaatgggaagtggtgccaatacctat 40206978  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 55221165 - 55221063
Alignment:
Q  31 cattgttgtaaatcacagcagctccaaagcttctagcagggttaataccagttccagtgataggaatagtagcaaggtgaaccataaacactgcaaaccc 130  Q
    |||||||| | || |||||||| || ||||| || |||||||| || || || || ||||| || ||||| ||||||||||||||||| || ||||| ||    
T  55221165 cattgttgaagatgacagcagcaccgaagctccttgcagggttgattccggtaccggtgattggtatagttgcaaggtgaaccataaaaacagcaaaacc 55221066  T
Q  131 aat 133  Q
    |||    
T  55221065 aat 55221063  T

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