View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20676_low_4 (Length: 364)
Name: NF20676_low_4
Description: NF20676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20676_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 33537461 - 33537806
Alignment:
| Q |
1 |
ccacgagaggaagtaggatccacaaagacaactcgacgacaccgacaaagtcgtcaatccaatgaagatgaagaaaacagcaagcccccaactacaaaac |
100 |
Q |
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||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33537461 |
ccacgagaggaaggagcatccacaaagacaactcgacgacaccgacaaagtcgtcaatccaatgaagatgaagaaaacagcaagcccccaactacaaaac |
33537560 |
T |
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| Q |
101 |
aatctcgcagaaaggcaaaatcatcgtcggaggaaaaggataaggaaacttcttccgcaagaaagacctctagaactcgaaagtcgtctaaggctgattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33537561 |
aatctcgcagaaaggcaaaatcatcgtcggaggaaaaggataaggaaacttcttccacaagaaagacctctagaactcgaaagtcgtctaaggctgattc |
33537660 |
T |
|
| Q |
201 |
cttaactgatatccccttcacagatccagggccttcagctcaatagacacctcttaagtgattaatagtgctctggcataaataatttcagttttagaga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33537661 |
cttaactgatatccccttcacagatccagggccttcagcccaatagacacctcttaagtgattaatagtgctctggcataaataatttcagttttagaga |
33537760 |
T |
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| Q |
301 |
gagatttcgagagcaggatatattttattcttctcttgtttatatt |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33537761 |
gagatttcgagagcaggatatattttattcttctcttgtttatatt |
33537806 |
T |
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