View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20676_low_6 (Length: 282)
Name: NF20676_low_6
Description: NF20676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20676_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 9e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 1208263 - 1208469
Alignment:
| Q |
19 |
agtagtgattactgattgcagaaacatgtgatgcttggaagtgaaaacatgttagaagttagaacaggaacttactaaggatgtcactctaagttgtaaa |
118 |
Q |
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| T |
1208263 |
agtagtgattactgattacagaaacatgtgatgcttggaagtgaaaacatgttagaagttagaacaggaaattgctaagggtgtcactctaagttgtaaa |
1208362 |
T |
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| Q |
119 |
atttgcatagagatgtttacaagagtggtgnnnnnnngtgcaccctagatgaaatcaaataaaattaatgggacaacatctatttaacaaaatttaaaca |
218 |
Q |
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| T |
1208363 |
atttgcatag-----------agagtggtgaaaaaaagtgcaccctagatgaaatcaaataaaattaatgggacaaaatctatttaacaaaatttaaaca |
1208451 |
T |
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| Q |
219 |
ttgtaatgttagtttatt |
236 |
Q |
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| T |
1208452 |
ttgtaatgttagtttatt |
1208469 |
T |
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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 8188206 - 8188138
Alignment:
| Q |
47 |
tgatgcttggaagtgaaaacatgttagaagttagaacaggaacttactaaggatgtcactctaagttgt |
115 |
Q |
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| T |
8188206 |
tgatgcttggaagtgaaaacctgttagaagttagaacaggaattttctaaaggtgttactgtaagttgt |
8188138 |
T |
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