View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20677_high_2 (Length: 431)
Name: NF20677_high_2
Description: NF20677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20677_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 52926210 - 52926623
Alignment:
| Q |
1 |
cagcagcaacagtactgagtgcttggtcaagaacataaatgaaagaggaagaatcgaagtcttgttgagagcgatagcaaacaaagagaccgcaaccgat |
100 |
Q |
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| T |
52926210 |
cagcagcaacagtactgagtgcttggtcaagaacataaatgaaagaggaagaatcgaagtcttgttgagagcgatagcaaacaaagagaccgcaaccgat |
52926309 |
T |
|
| Q |
101 |
gcaattcatgcggaattgtttctcgagtttgccttggccacgctttaagagaacgttgccagcttcgtgaatattgaatcttgcaagatgtttggtctta |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52926310 |
gcaattcatgcggaattgtttctcgagtttgccttggccacgctttaagagaacgttgccagcttcgtgaatattgaatcttgcaagatgtttggtctta |
52926409 |
T |
|
| Q |
201 |
tccaaaacgtaagctctgtcagtgtttcttcgaggcattttctgcaactgggtatctgcgattgcaattaggttacaactttcaattcaatttgatatgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
52926410 |
tccaaaacgtaagctctgtcagtgtttcttcgaggcattttctgcaactgggtatctgcgattgcaattaggttactactttcaattcaatttgatgtgt |
52926509 |
T |
|
| Q |
301 |
tattatgaatgaatgattcattaccagtgatgagaacatgggatccgcagtgtttgcagtaataaacgaagagatcggagtgtgggccctcaggagctgc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52926510 |
tattatgaatgaatgattcattaccagtgatgagaacatgggatccgcagtgtttgcagtaataaacgaagagatcggagtgtgggccctcaggagctgc |
52926609 |
T |
|
| Q |
401 |
atcctcgcttgagt |
414 |
Q |
| |
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|||||||||||||| |
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| T |
52926610 |
atcctcgcttgagt |
52926623 |
T |
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