View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20677_low_3 (Length: 277)
Name: NF20677_low_3
Description: NF20677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20677_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 10 - 269
Target Start/End: Original strand, 12484193 - 12484452
Alignment:
| Q |
10 |
caaccattaatatgctttcgctcaacaacttggactattgggaggagttggtccatgatactcctagttcctaatagcattgttcttctattaaaaaata |
109 |
Q |
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| T |
12484193 |
caaccattaatatgcttttgcccaacaacttggacatttcgggggagttggtccatgacactcctaggtcctaacagcattgttcttctattaaaaaata |
12484292 |
T |
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| Q |
110 |
gcacaaagggacttagatccaatggcactatgcagtatat-ggaatacttgcttcttcaaaggggaaaccaatgcaactacaatattatctaatggagtt |
208 |
Q |
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| T |
12484293 |
gcacaaagggacctagatccagtggcactatgcagtgtatgggaatgtttgcttcttcaaatggg-caccaatgcaactacgatattatgtgatggagta |
12484391 |
T |
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| Q |
209 |
gaggttatttatagattctctatggtgatatgctcgggataatgaaatcctaatctctgat |
269 |
Q |
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| T |
12484392 |
gaagttatttatagtttctctatggtgatttgctcgggataacaaagtcctaatctctgat |
12484452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 12513498 - 12513617
Alignment:
| Q |
1 |
gtggatgtacaaccattaatatgctttcgctcaacaacttggactattgggaggagttggtccatgatactcctagttcctaatagcattgttcttctat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12513498 |
gtggatgtacaaccattaatatgctttcgctcaacaacttggacaattgggaggagttggtccatgatactcctagttcctaatagcattgttcttctat |
12513597 |
T |
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| Q |
101 |
taaaaaatagcacaaaggga |
120 |
Q |
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| T |
12513598 |
taaaaaatagcacaaaggga |
12513617 |
T |
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