View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20678_high_1 (Length: 582)
Name: NF20678_high_1
Description: NF20678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20678_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 567; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 1 - 567
Target Start/End: Original strand, 10461568 - 10462134
Alignment:
| Q |
1 |
agtgataattaattatagtaacaagctgtaatctccaggtcatcccctgttttgtctttggatgcactgatataagacaagtatagctatagcatcaatt |
100 |
Q |
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| T |
10461568 |
agtgataattaattatagtaacaagctgtaatctccaggtcatcccctgttttgtctttggatgcactgatataagacaagtatagctatagcatcaatt |
10461667 |
T |
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| Q |
101 |
gatatatttaagagcagaaaatattcaaaggggaattgtcaaacaatgattaaataatatgaaaatgcagcatgataagcaaaccttattaccttaatgt |
200 |
Q |
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| T |
10461668 |
gatatatttaagagcagaaaatattcaaaggggaattgtcaaacaatgattaaataatatgaaaatgcagcatgataagcaaaccttattaccttaatgt |
10461767 |
T |
|
| Q |
201 |
tataaaaaactttaccattggagataatcggaaagttgctgtagcttccgcgctgaaacctgttattccaccagcagggaacaagtatgtcaatagcgtc |
300 |
Q |
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| T |
10461768 |
tataaaaaactttaccattggagataatcggaaagttgctgtagcttccgcgctgaaacctgttattccaccagcagggaacaagtatgtcaatagcgtc |
10461867 |
T |
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| Q |
301 |
ggggatgttgggtccaaacatatccctgagcaccgccatagcttctctcaaagtctcttcattggtctgagcttccacacgttttgattccccattagtc |
400 |
Q |
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| T |
10461868 |
ggggatgttgggtccaaacatatccctgagcaccgccatagcttctctcaaagtctcttcattggtctgagcttccacacgttttgattccccattagtc |
10461967 |
T |
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| Q |
401 |
aatgtcacgaccaagatattggagccaggatatgcattatccatgtgctggtaacaaacaaatcagcagataagtgatttggatgagtaagcaagagatc |
500 |
Q |
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| T |
10461968 |
aatgtcacgaccaagatattggagccaggatatgcattatccatgtgctggtaacaaacaaatcagcagataagtgatttggatgagtaagcaagagatc |
10462067 |
T |
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| Q |
501 |
ctagacaactacaatattatgttttctgtgttggatgaataagtaaaaggactacaatcaccaatgt |
567 |
Q |
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| T |
10462068 |
ctagacaactacaatattatgttttctgtgttggatgaataagtaaaaggactacaatcaccaatgt |
10462134 |
T |
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