View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20678_high_15 (Length: 250)
Name: NF20678_high_15
Description: NF20678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20678_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 28605441 - 28605676
Alignment:
| Q |
1 |
atttagtattaagtccacttttacatgaatgtatagttgtctacaaacataaatcattctactttcaacttagttttaactaaaatcagttcattcaaaa |
100 |
Q |
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| T |
28605441 |
atttagtattaagtccacttttacgtgaatgtatagttgtctacaaacataaatcattctactttcaacttagttttaactaaaatcagttcattcaaaa |
28605540 |
T |
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| Q |
101 |
tcgttgtattttttgggtaaaaccaaacacatacttgataacatttggtttgtaatttattagcttggaagaatcgagcnnnnnnnattagtaatttgtt |
200 |
Q |
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| T |
28605541 |
tcgttatattttttgggtaaaaccaaacacatacttgataacatttggtttataatttattagcttggaagaatcgagcttttttgattagtaatttgtt |
28605640 |
T |
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| Q |
201 |
ttatttatgtatgtgattgatgtaatagtgtttccc |
236 |
Q |
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| T |
28605641 |
ttatttatgtatgtgattgatgtaatagtgtttccc |
28605676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 27045554 - 27045611
Alignment:
| Q |
44 |
caaacataaatcattctactttcaacttagttttaactaaaatcagttcattcaaaat |
101 |
Q |
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| T |
27045554 |
caaacataaataactctacattcaacttacttttaactaaaatcaattcattcaaaat |
27045611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 39672982 - 39673038
Alignment:
| Q |
46 |
aacataaatcattctactttcaacttagttttaactaaaatcagttcattcaaaatc |
102 |
Q |
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| T |
39672982 |
aacataaatcactctatattcaactaagttttaactaaaatcagttcaatcaaaatc |
39673038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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