View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20678_high_16 (Length: 239)
Name: NF20678_high_16
Description: NF20678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20678_high_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 124 - 223
Target Start/End: Original strand, 3663742 - 3663841
Alignment:
| Q |
124 |
cccacaagggttctacggagtaatcgaagtatttcgtgtaccagtcnnnnnnnccacatgaaatgtttgaaccattgtgcaatccattatgtaaccttga |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3663742 |
cccacaagggttctacggagtaatcgaagtatttcgtgtaccagtcaaaaaaaccacatgaaatgtttgaaccattgtgcaatcccttatgtaaccttga |
3663841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 3663524 - 3663568
Alignment:
| Q |
1 |
ataatttctaagttaaaattatgatgaaccatgaatcacctataa |
45 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3663524 |
ataatttctaagttaaaattatgatgaaccatgaatcacctataa |
3663568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University