View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20678_high_2 (Length: 482)
Name: NF20678_high_2
Description: NF20678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20678_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 564331 - 564582
Alignment:
| Q |
1 |
atcggttccttgaatcggtacacaacctgggattttgattggttcttgcaagtctttaaactcaccagaaattgtttcatctagaacttttgaatgaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
564331 |
atcggttccttgaatcggtacacaacctgggattttgattggttcttgcaagtctttaaactcaccagaaattgtttcatctagaacttttgaatgaaaa |
564430 |
T |
|
| Q |
101 |
caaagtgatagcactgtggctgatgaaggaaaatatgtatatgataaaatgttgagtttcttggcaaatgagaacacttcataggcaaaataatcagcta |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
564431 |
caaagtgataatactgtggctgatgaaggaaaatatgtatatgataaaatgttgagtttcttggcaaatgagaacacttcataggcaaaataatcagcta |
564530 |
T |
|
| Q |
201 |
ttatagcaactagttttgatgtttttgttttcaatgcatcaatgatagatgg |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
564531 |
ttatagcaactagttttgatgtttttgttttcaatgcatcaatgatatatgg |
564582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 262 - 482
Target Start/End: Complemental strand, 565243 - 565023
Alignment:
| Q |
262 |
atattaattaagagtcataagtatgtttaattagtaaaggcatgcaagaagaagaaactctcataggtaaattttcttttaatagttggagtagtatctt |
361 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
565243 |
atattaattaagagtcatgagtatgtttaattagtaaaggcatgcaagaagaagaaactctcataggtaaattttcttttaatagctggagtagtatctt |
565144 |
T |
|
| Q |
362 |
ctctatcaaagattacaataataagagaaagacaaagaggacaaaattcttgaaaagatcaagagtgaatcatggatccaattaaggattcttaaatcgc |
461 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
565143 |
ctctatcaaagattacaataataagagaaagacaaagaggacaaaattcttgaaaagatcaagagtgaatcgtggatccaattaaggattcttaaatcgc |
565044 |
T |
|
| Q |
462 |
tcacaacaaaaattaatggta |
482 |
Q |
| |
|
||||||||| ||||||||||| |
|
|
| T |
565043 |
tcacaacaagaattaatggta |
565023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 874024 - 874093
Alignment:
| Q |
28 |
tgggattttgattggttcttgcaagtctttaaactcaccagaaattgtttcatctagaacttttgaatga |
97 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| ||||| |
|
|
| T |
874024 |
tgggattatgattggttcttgcaagtctttaaattcaccagaaattattttatctagaacttttaaatga |
874093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University