View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20678_high_5 (Length: 362)

Name: NF20678_high_5
Description: NF20678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20678_high_5
NF20678_high_5
[»] chr7 (14 HSPs)
chr7 (16-328)||(22087439-22087756)
chr7 (229-359)||(25255382-25255512)
chr7 (284-362)||(9449998-9450076)
chr7 (284-362)||(19297022-19297100)
chr7 (16-104)||(22062705-22062796)
chr7 (16-104)||(22069163-22069256)
chr7 (283-362)||(34899467-34899546)
chr7 (289-362)||(22743096-22743169)
chr7 (275-362)||(19404609-19404696)
chr7 (283-362)||(48061574-48061653)
chr7 (291-362)||(48930859-48930930)
chr7 (297-362)||(13796803-13796868)
chr7 (289-362)||(38798933-38799006)
chr7 (283-362)||(12141167-12141247)
[»] chr6 (15 HSPs)
chr6 (242-362)||(13546520-13546640)
chr6 (247-362)||(9380174-9380289)
chr6 (268-362)||(33053013-33053107)
chr6 (275-362)||(12170619-12170706)
chr6 (275-362)||(23128769-23128856)
chr6 (283-362)||(7515062-7515141)
chr6 (284-362)||(20226002-20226080)
chr6 (284-362)||(22119986-22120064)
chr6 (256-362)||(30776814-30776920)
chr6 (290-362)||(14801978-14802050)
chr6 (268-362)||(67846-67940)
chr6 (268-362)||(9341496-9341590)
chr6 (289-362)||(29255312-29255385)
chr6 (283-359)||(21426546-21426622)
chr6 (266-362)||(31296971-31297067)
[»] chr8 (15 HSPs)
chr8 (275-362)||(23230795-23230882)
chr8 (240-362)||(5046905-5047027)
chr8 (283-362)||(45445669-45445748)
chr8 (268-362)||(31013451-31013545)
chr8 (244-362)||(43833815-43833933)
chr8 (247-362)||(41060085-41060200)
chr8 (268-362)||(25190908-25191002)
chr8 (276-362)||(37971435-37971521)
chr8 (256-362)||(41896669-41896775)
chr8 (283-362)||(7198053-7198132)
chr8 (283-362)||(7883099-7883178)
chr8 (283-362)||(16928615-16928694)
chr8 (244-362)||(14585829-14585947)
chr8 (244-309)||(26468969-26469034)
chr8 (286-362)||(10377841-10377917)
[»] chr1 (21 HSPs)
chr1 (275-362)||(7337515-7337602)
chr1 (283-362)||(45415711-45415790)
chr1 (247-362)||(14489425-14489540)
chr1 (283-362)||(14872792-14872871)
chr1 (256-362)||(36775543-36775649)
chr1 (256-362)||(48750338-48750444)
chr1 (265-356)||(5600924-5601015)
chr1 (283-362)||(9341879-9341958)
chr1 (244-362)||(18939472-18939591)
chr1 (291-362)||(19061062-19061133)
chr1 (283-362)||(37720009-37720088)
chr1 (256-362)||(31317889-31317995)
chr1 (283-362)||(19596320-19596399)
chr1 (275-362)||(24583299-24583386)
chr1 (291-362)||(31919142-31919213)
chr1 (291-362)||(34529227-34529298)
chr1 (275-362)||(35484243-35484330)
chr1 (284-362)||(5983989-5984067)
chr1 (276-362)||(13144665-13144751)
chr1 (256-362)||(34412925-34413031)
chr1 (322-362)||(4413267-4413307)
[»] chr5 (12 HSPs)
chr5 (284-362)||(31391614-31391692)
chr5 (289-362)||(14211376-14211449)
chr5 (256-362)||(2979139-2979245)
chr5 (283-362)||(9113585-9113664)
chr5 (291-362)||(13422082-13422153)
chr5 (283-362)||(38597946-38598025)
chr5 (244-362)||(19121061-19121179)
chr5 (244-362)||(28540727-28540845)
chr5 (291-359)||(11867801-11867869)
chr5 (275-362)||(10722910-10722997)
chr5 (275-362)||(11976787-11976874)
chr5 (290-362)||(24229651-24229723)
[»] chr3 (20 HSPs)
chr3 (256-362)||(27856314-27856420)
chr3 (275-362)||(38142674-38142761)
chr3 (275-362)||(48650586-48650673)
chr3 (264-362)||(30830124-30830222)
chr3 (256-362)||(42460898-42461004)
chr3 (283-362)||(45568305-45568384)
chr3 (287-362)||(51303507-51303582)
chr3 (256-337)||(24175964-24176045)
chr3 (294-362)||(51923876-51923944)
chr3 (291-362)||(628791-628862)
chr3 (291-362)||(38859980-38860051)
chr3 (291-362)||(43017037-43017108)
chr3 (283-362)||(44959833-44959912)
chr3 (283-362)||(52922977-52923056)
chr3 (256-362)||(21289647-21289753)
chr3 (183-212)||(633114-633143)
chr3 (297-362)||(46220812-46220877)
chr3 (286-362)||(29922206-29922282)
chr3 (286-362)||(29971359-29971435)
chr3 (266-362)||(50194178-50194274)
[»] scaffold0603 (1 HSPs)
scaffold0603 (242-362)||(7865-7986)
[»] chr2 (22 HSPs)
chr2 (283-362)||(11985094-11985173)
chr2 (242-362)||(17151584-17151704)
chr2 (242-362)||(18107570-18107690)
chr2 (266-362)||(37994444-37994540)
chr2 (283-362)||(4041455-4041534)
chr2 (283-362)||(7646638-7646717)
chr2 (284-362)||(32190824-32190902)
chr2 (284-362)||(37876468-37876546)
chr2 (242-362)||(12554000-12554121)
chr2 (283-360)||(31788618-31788695)
chr2 (283-362)||(4778913-4778992)
chr2 (283-362)||(18763628-18763707)
chr2 (252-362)||(19597999-19598109)
chr2 (283-362)||(27097268-27097347)
chr2 (283-362)||(29279431-29279510)
chr2 (275-362)||(32448469-32448556)
chr2 (291-362)||(33585604-33585675)
chr2 (256-362)||(3309105-3309211)
chr2 (256-362)||(10237050-10237156)
chr2 (284-362)||(10929825-10929903)
chr2 (284-362)||(12677313-12677390)
chr2 (265-353)||(27477319-27477407)
[»] chr4 (12 HSPs)
chr4 (244-362)||(43853613-43853731)
chr4 (256-362)||(52060756-52060862)
chr4 (289-362)||(36194878-36194951)
chr4 (283-362)||(48257492-48257571)
chr4 (283-358)||(2520953-2521028)
chr4 (283-362)||(19853372-19853451)
chr4 (275-362)||(51888063-51888150)
chr4 (289-359)||(31891153-31891223)
chr4 (292-362)||(33921224-33921294)
chr4 (268-362)||(43095798-43095892)
chr4 (262-362)||(12199533-12199632)
chr4 (283-327)||(52097756-52097800)
[»] scaffold0064 (1 HSPs)
scaffold0064 (244-362)||(18904-19021)
[»] scaffold0884 (1 HSPs)
scaffold0884 (283-362)||(1833-1912)
[»] scaffold0445 (1 HSPs)
scaffold0445 (283-362)||(1494-1573)
[»] scaffold0347 (1 HSPs)
scaffold0347 (275-362)||(6180-6267)
[»] scaffold0088 (1 HSPs)
scaffold0088 (276-362)||(50926-51012)
[»] scaffold0042 (1 HSPs)
scaffold0042 (322-362)||(92395-92435)


Alignment Details
Target: chr7 (Bit Score: 126; Significance: 6e-65; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 16 - 328
Target Start/End: Complemental strand, 22087756 - 22087439
Alignment:
Q  16 tgagatgaaggggggagattcatgttggagtgtt---attaccaatgcagcgccgtttggagaattggagctgaaatgctgaaccctaatacnnnnnnnn 112  Q
    ||||||| |||| |||||||||| ||||||| ||   ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||            
T  22087756 tgagatggagggaggagattcatattggagttttcttattaccaatacagcgccgtttggagaattggagctgaaacgctgaaccctaatacttttgttt 22087657  T
Q  113 nnnnnnnnnnnnnnaacaaacttagtaatgcttttgtagtttgacgaaaataaataaagatttct-ttctatttaatccaccaataaattcttacttttt 211  Q
                   |||||| | |||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||    
T  22087656 tgttttatttttttgacaaacgttgtaatgcttttgtagtttgacgaaaataaaaaaagatttttattctatttaatccaccaataaattcttacttttt 22087557  T
Q  212 tggaacatagtttttt-ccattccaatagaaagtacatcaaatataataacatgttcaacattcctaaaagtgtaaatggtgaatatgcgaataaactcg 310  Q
    |||||||||||||||| |||||||| || | ||||||||||||||||||||||||| |||||| |||||| |||||| |||||||  | ||||||||||     
T  22087556 tggaacatagtttttttccattccattacagagtacatcaaatataataacatgttgaacattgctaaaaatgtaaaaggtgaatcggtgaataaactca 22087457  T
Q  311 caatatccaaattaatag 328  Q
    ||| || |||||||||||    
T  22087456 caacattcaaattaatag 22087439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 359
Target Start/End: Complemental strand, 25255512 - 25255382
Alignment:
Q  229 cattccaatagaaagtacatcaaatataataacatgttcaacattcctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatag 328  Q
    ||||| ||| || |||||||||||||||||||||||||||| ||  ||||||  ||||| |||| || |||||| |||||| ||| ||| || |||||||    
T  25255512 cattcaaattgagagtacatcaaatataataacatgttcaatatcgctaaaaacgtaaagggtgtatctgcgaacaaactcacaacatctaagttaatag 25255413  T
Q  329 tatgcaacagaaaaatgcctacaaataatat 359  Q
     || ||||   ||||||||||||||| ||||    
T  25255412 catacaacgacaaaatgcctacaaatgatat 25255382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 284 - 362
Target Start/End: Original strand, 9449998 - 9450076
Alignment:
Q  284 taaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    |||| |||||||||||||| |||||| ||| | | |||||||||| || |||| | |||||||||||||||||||||||    
T  9449998 taaagggtgaatatgcgaacaaactcacaacacctaaattaatagcatacaacggcaaaatgcctacaaataatatgat 9450076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 284 - 362
Target Start/End: Complemental strand, 19297100 - 19297022
Alignment:
Q  284 taaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    |||| ||||||| |||||| |||||| ||| | |||||||||||| ||  ||||| |||||||||||||||||||||||    
T  19297100 taaagggtgaatctgcgaacaaactcacaacacccaaattaatagcatataacagcaaaatgcctacaaataatatgat 19297022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 22062796 - 22062705
Alignment:
Q  16 tgagatgaaggggggagattcatgttggagt---gttattaccaatgcagcgccgtttggagaattggagctgaaatgctgaaccctaatac 104  Q
    ||||||| |||| ||||||||||| ||||||   ||| |||| || || | ||||||||| ||||||||||||||| |||||||||||||||    
T  22062796 tgagatggagggaggagattcatgatggagttttgttgttacaaaggctgtgccgtttggtgaattggagctgaaacgctgaaccctaatac 22062705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 22069256 - 22069163
Alignment:
Q  16 tgagatgaaggggggagattcatgttggagt---gttattaccaatgcagcgccgttt--ggagaattggagctgaaatgctgaaccctaatac 104  Q
    ||||||| |||| ||||||||||||||||||   ||| ||||||| || | |||||||  ||||||||||||||| || |||||||||||||||    
T  22069256 tgagatggagggaggagattcatgttggagttttgttgttaccaaggcggtgccgtttttggagaattggagctgtaacgctgaaccctaatac 22069163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 362
Target Start/End: Original strand, 34899467 - 34899546
Alignment:
Q  283 gtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||| ||||||| |||||| |||||| ||| |||||| ||||||| || |||| | ||||||| |||||||||||||||    
T  34899467 gtaaagggtgaatctgcgaacaaactcacaacatccaagttaatagcatacaacggcaaaatgcatacaaataatatgat 34899546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 289 - 362
Target Start/End: Complemental strand, 22743169 - 22743096
Alignment:
Q  289 ggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||||| |||||| |||||| ||| | |||||||||||| || |||| | |||||||| ||||||||||||||    
T  22743169 ggtgaatctgcgaaaaaactcccaacacccaaattaatagcatacaacggcaaaatgccaacaaataatatgat 22743096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 362
Target Start/End: Original strand, 19404609 - 19404696
Alignment:
Q  275 ctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    |||||| |||||| | ||||| |||||| |||||| ||  |||||| |||||||  |||||| | |||| ||||||||||||||||||    
T  19404609 ctaaaaatgtaaaggatgaatctgcgaacaaactcacagcatccaagttaatagcgtgcaacggcaaaaagcctacaaataatatgat 19404696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 362
Target Start/End: Complemental strand, 48061653 - 48061574
Alignment:
Q  283 gtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||| ||||||| |||||| ||||||  || | |||| ||||||| || |||| | |||||||||||||||||||||||    
T  48061653 gtaaagggtgaatctgcgaacaaactcataacacccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 48061574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 362
Target Start/End: Complemental strand, 48930930 - 48930859
Alignment:
Q  291 tgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||| |||||| |||||| ||||| |||| ||||||| || |||| | |||||||| ||||||||||||||    
T  48930930 tgaatctgcgaacaaactcacaatacccaagttaatagcatacaacggcaaaatgccaacaaataatatgat 48930859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 362
Target Start/End: Original strand, 13796803 - 13796868
Alignment:
Q  297 tgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    |||||| |||||| ||| |||||| ||||||| || ||||   |||||||||||||||||||||||    
T  13796803 tgcgaacaaactcacaacatccaagttaatagcatacaacgacaaaatgcctacaaataatatgat 13796868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 362
Target Start/End: Complemental strand, 38799006 - 38798933
Alignment:
Q  289 ggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||||| |||||| |||||| ||| |||||| ||||||| ||   || | |||||||||||||||||||||||    
T  38799006 ggtgaatctgcgaacaaactcacaacatccaagttaatagcataagacggcaaaatgcctacaaataatatgat 38798933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 362
Target Start/End: Original strand, 12141167 - 12141247
Alignment:
Q  283 gtaaatggtgaatatgcgaataaactcgcaatatccaaa-ttaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||| |||||||||||||| |||||| ||| | || || ||||||| || |||| | ||||||| |||||||||||||||    
T  12141167 gtaaaaggtgaatatgcgaacaaactcacaacaacccaagttaatagcatacaacggcaaaatgcatacaaataatatgat 12141247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 242 - 362
Target Start/End: Original strand, 13546520 - 13546640
Alignment:
Q  242 agtacatcaaatataataacatgttcaacattcctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaa 341  Q
    ||||||||| ||| |||||||||||||||||| ||||||  ||||| ||||| | || ||||||||||||||||   |||||||||| || ||||   ||    
T  13546520 agtacatcagatacaataacatgttcaacattactaaaaacgtaaagggtgattctgtgaataaactcgcaatacttaaattaatagcatacaacgacaa 13546619  T
Q  342 aatgcctacaaataatatgat 362  Q
    ||| |||||||||||||||||    
T  13546620 aatacctacaaataatatgat 13546640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 247 - 362
Target Start/End: Complemental strand, 9380289 - 9380174
Alignment:
Q  247 atcaaatataataacatgttcaacattcctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgc 346  Q
    ||||||||  |||||||| ||||||||  ||||| ||||||||||||||||||||| |||||| ||| ||||||  |||||| || ||||   |||||||    
T  9380289 atcaaatactataacatgatcaacattgataaaaatgtaaatggtgaatatgcgaacaaactcacaacatccaagataatagaatacaacgacaaaatgc 9380190  T
Q  347 ctacaaataatatgat 362  Q
     |||||||||||||||    
T  9380189 atacaaataatatgat 9380174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 268 - 362
Target Start/End: Original strand, 33053013 - 33053107
Alignment:
Q  268 aacattcctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    |||||| ||||||  ||||| |||||||||||||| |||||| ||  |||||| ||||||| || |||| | |||||||||||||||||||||||    
T  33053013 aacattgctaaaaacgtaaagggtgaatatgcgaacaaactcacagcatccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 33053107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 275 - 362
Target Start/End: Complemental strand, 12170706 - 12170619
Alignment:
Q  275 ctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    |||||| |||||| |||||||||||||  |||||| ||  | |||| ||||||| || |||||| |||||||||||||||||||||||    
T  12170706 ctaaaaatgtaaagggtgaatatgcgagcaaactcacagcacccaagttaatagcatacaacagcaaaatgcctacaaataatatgat 12170619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 275 - 362
Target Start/End: Complemental strand, 23128856 - 23128769
Alignment:
Q  275 ctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    |||||| |||||| ||||||| |||||| |||||| ||  | |||||||||||| || |||| | |||||||||||||||||||||||    
T  23128856 ctaaaaatgtaaagggtgaatctgcgaacaaactcacagcacccaaattaatagcatacaacggcaaaatgcctacaaataatatgat 23128769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 362
Target Start/End: Original strand, 7515062 - 7515141
Alignment:
Q  283 gtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||| ||||||| |||||| |||||| ||  | |||| ||||||| || || |||||||||||||||||||||||||||    
T  7515062 gtaaagggtgaatttgcgaacaaactcacagaaaccaagttaatagcatacagcagaaaaatgcctacaaataatatgat 7515141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 362
Target Start/End: Complemental strand, 20226080 - 20226002
Alignment:
Q  284 taaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    |||||| ||||| |||||| |||||| ||||| |||| ||||||| || ||||   |||||||||||||||||||||||    
T  20226080 taaatgatgaatttgcgaacaaactcacaatacccaagttaatagcatacaacgacaaaatgcctacaaataatatgat 20226002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 362
Target Start/End: Complemental strand, 22120064 - 22119986
Alignment:
Q  284 taaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    |||||| ||||| |||||| |||||| ||||| |||| ||||||| || ||||   |||||||||||||||||||||||    
T  22120064 taaatgatgaatttgcgaacaaactcacaatacccaagttaatagcatacaacgacaaaatgcctacaaataatatgat 22119986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 362
Target Start/End: Complemental strand, 30776920 - 30776814
Alignment:
Q  256 aataacatgttcaacattcctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaata 355  Q
    ||||||||| |||| ||  ||||||  ||||| ||||||| |||||| |||||| ||| | |||| ||||||| || | || | ||||||||||||||||    
T  30776920 aataacatgatcaatatcgctaaaaacgtaaagggtgaatctgcgaacaaactcacaacacccaagttaatagcattccacggcaaaatgcctacaaata 30776821  T
Q  356 atatgat 362  Q
    |||||||    
T  30776820 atatgat 30776814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 362
Target Start/End: Complemental strand, 14802050 - 14801978
Alignment:
Q  290 gtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    |||||| |||||| |||||| ||  |||||| ||||||| || |||| | |||||||||||||||||||||||    
T  14802050 gtgaatctgcgaacaaactcacagcatccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 14801978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 362
Target Start/End: Original strand, 67846 - 67940
Alignment:
Q  268 aacattcctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    |||||| ||||||  ||||| ||||||| |||||| |||||| ||  | |||| ||||||| || |||| | |||||||||| ||||||||||||    
T  67846 aacattgctaaaaacgtaaagggtgaatctgcgaacaaactcacagcacccaagttaatagcatacaacggcaaaatgcctataaataatatgat 67940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 362
Target Start/End: Original strand, 9341496 - 9341590
Alignment:
Q  268 aacattcctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    |||||| ||||||  ||||| ||||||| |||||| |||||| ||| | |||| ||||||| || ||||   |||||||||||||| ||||||||    
T  9341496 aacattgctaaaaacgtaaagggtgaatctgcgaacaaactcacaacacccaagttaatagcatacaacgacaaaatgcctacaaacaatatgat 9341590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 362
Target Start/End: Original strand, 29255312 - 29255385
Alignment:
Q  289 ggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||||| || ||| |||||| ||| | |||| ||||||| || ||||||  ||||||||||||||||||||||    
T  29255312 ggtgaatctgtgaacaaactcacaacacccaagttaatagcatacaacagtgaaatgcctacaaataatatgat 29255385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 359
Target Start/End: Original strand, 21426546 - 21426622
Alignment:
Q  283 gtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatat 359  Q
    ||||| |||||||||||||| |||||| ||  | |||| ||||||| || |||| | |||||| |||||||||||||    
T  21426546 gtaaacggtgaatatgcgaacaaactcacagcacccaagttaatagcatacaacggcaaaatgtctacaaataatat 21426622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 362
Target Start/End: Complemental strand, 31297067 - 31296971
Alignment:
Q  266 tcaacattcctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    |||||||  ||||||  ||||| |||||| ||||||| ||||||  |  |||||||||||||| || ||||   |||||||||||||| ||||||||    
T  31297067 tcaacatcgctaaaaacgtaaagggtgaaaatgcgaacaaactcaaatcatccaaattaatagcatacaacgacaaaatgcctacaaacaatatgat 31296971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 275 - 362
Target Start/End: Complemental strand, 23230882 - 23230795
Alignment:
Q  275 ctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||||||||||||||||||| |||||| |||||| ||| | |||| ||||||| || ||||   |||||||||||||||||||||||    
T  23230882 ctaaaagtgtaaatggtgaatctgcgaacaaactcacaacacccaagttaatagcatacaacgacaaaatgcctacaaataatatgat 23230795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 362
Target Start/End: Complemental strand, 5047027 - 5046905
Alignment:
Q  240 aaagtacatcaaatataataacatgttcaacattcctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacaga 339  Q
    ||||||||||||||| |||||||||||||||||| |||||| | |||||| | ||| | |||| |||||| ||  | |||| ||||||  || ||||       
T  5047027 aaagtacatcaaatacaataacatgttcaacattactaaaaatataaatgataaatcttcgaacaaactcacatcacccaagttaataacatacaacgat 5046928  T
Q  340 aaaatgcctacaaataatatgat 362  Q
    |||||||||||||||||||||||    
T  5046927 aaaatgcctacaaataatatgat 5046905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 283 - 362
Target Start/End: Original strand, 45445669 - 45445748
Alignment:
Q  283 gtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||| |||||||||||||| |||||| ||| |||||| ||||||| ||  ||||  |||||||||||||||||||||||    
T  45445669 gtaaaaggtgaatatgcgaacaaactcacaacatccaagttaatagcataaaacaacaaaatgcctacaaataatatgat 45445748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 268 - 362
Target Start/End: Original strand, 31013451 - 31013545
Alignment:
Q  268 aacattcctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    |||||| ||||||  ||||| ||||||| |||||| |||||| ||| | |||| ||||||| || |||| | |||||||||||||||||||||||    
T  31013451 aacattgctaaaaacgtaaagggtgaatctgcgaacaaactcacaacacccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 31013545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 362
Target Start/End: Original strand, 43833815 - 43833933
Alignment:
Q  244 tacatcaaatataataacatgttcaacattcctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaa 343  Q
    ||||||||| | ||||||||| |||| ||  ||||||  ||||||||||||| ||| || |||||| ||  | |||| ||||||| || |||| | ||||    
T  43833815 tacatcaaagacaataacatgatcaatatcgctaaaaaagtaaatggtgaatctgcaaacaaactcacagcacccaagttaatagcatacaacggcaaaa 43833914  T
Q  344 tgcctacaaataatatgat 362  Q
    |||||||||||||||||||    
T  43833915 tgcctacaaataatatgat 43833933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 362
Target Start/End: Original strand, 41060085 - 41060200
Alignment:
Q  247 atcaaatataataacatgttcaacattcctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgc 346  Q
    |||| ||| |||||||||||||||||  ||||||  ||||| | ||||| |||||| |||||| ||  | ||||||| |||| || |||||  ||||||     
T  41060085 atcagatacaataacatgttcaacatcactaaaaacgtaaaggatgaatctgcgaacaaactcacatcacccaaattgatagcatacaacaacaaaatgg 41060184  T
Q  347 ctacaaataatatgat 362  Q
    ||||||||||||||||    
T  41060185 ctacaaataatatgat 41060200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 362
Target Start/End: Original strand, 25190908 - 25191002
Alignment:
Q  268 aacattcctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    |||||| ||||||  ||||| ||||||| |||||| |||||| ||  | |||| ||||||| ||  || ||||||||||||||||||||||||||    
T  25190908 aacattgctaaaatcgtaaaaggtgaatctgcgaacaaactcacagcacccaagttaatagcataaaatagaaaaatgcctacaaataatatgat 25191002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 362
Target Start/End: Complemental strand, 37971521 - 37971435
Alignment:
Q  276 taaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||| |||||| ||||||| |||||| |||||| ||| | |||| ||||||| || |||| | |||||||||||||||||| ||||    
T  37971521 taaaaatgtaaagggtgaatctgcgaacaaactcacaacacccaagttaatagcatacaacggcaaaatgcctacaaataatgtgat 37971435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 362
Target Start/End: Complemental strand, 41896775 - 41896669
Alignment:
Q  256 aataacatgttcaacattcctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaata 355  Q
    ||||||||| |||| ||| ||||||  ||| | ||||||| |||||| |||||| ||| | |||| ||||||| || ||||   ||||||||||||||||    
T  41896775 aataacatgatcaatattgctaaaaacgtatagggtgaatctgcgaacaaactcacaacacccaagttaatagcatacaacgacaaaatgcctacaaata 41896676  T
Q  356 atatgat 362  Q
    |||||||    
T  41896675 atatgat 41896669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 362
Target Start/End: Original strand, 7198053 - 7198132
Alignment:
Q  283 gtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||| ||||||| ||||||||||||| ||| | |||||||||||| || ||||   ||||| ||| |||||||||||||    
T  7198053 gtaaagggtgaatctgcgaataaactcacaacacccaaattaatagcatacaacgacaaaattcctgcaaataatatgat 7198132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 362
Target Start/End: Original strand, 7883099 - 7883178
Alignment:
Q  283 gtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||| ||||||| |||||| |||||| ||  | |||| ||||||| || |||| | |||||||||||||||||||||||    
T  7883099 gtaaagggtgaatctgcgaacaaactcacagcacccaagttaataggatacaacggcaaaatgcctacaaataatatgat 7883178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 362
Target Start/End: Original strand, 16928615 - 16928694
Alignment:
Q  283 gtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||| ||||||| |||||| |||||| ||| | |||| ||||||| || |||  | |||||||||||||||||||||||    
T  16928615 gtaaagggtgaatctgcgaacaaactcacaacacccaagttaatagcatacaatggcaaaatgcctacaaataatatgat 16928694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 362
Target Start/End: Complemental strand, 14585947 - 14585829
Alignment:
Q  244 tacatcaaatataataacatgttcaacattcctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaa 343  Q
    ||||||| | ||||||||||| |||| ||  ||||||  ||| | ||||||| |||||| |||||| ||  | |||| ||||||| || |||| | ||||    
T  14585947 tacatcagagataataacatgatcaatatcgctaaaaacgtatagggtgaatctgcgaacaaactcacagcacccaagttaatagcatacaacggcaaaa 14585848  T
Q  344 tgcctacaaataatatgat 362  Q
     ||||||||||||||||||    
T  14585847 cgcctacaaataatatgat 14585829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 26468969 - 26469034
Alignment:
Q  244 tacatcaaatataataacatgttcaacattcctaaaagtgtaaatggtgaatatgcgaataaactc 309  Q
    ||||||| ||||||||||||| | |||||| ||||||  ||||||||||||| ||  |||||||||    
T  26468969 tacatcatatataataacatgattaacattgctaaaaacgtaaatggtgaatctgtaaataaactc 26469034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 362
Target Start/End: Complemental strand, 10377917 - 10377841
Alignment:
Q  286 aatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    |||||||||| |||||  |||||| ||  | |||| ||||||| || |||| | |||||||||||||||||||||||    
T  10377917 aatggtgaatctgcgagcaaactcacagcacccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 10377841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 275 - 362
Target Start/End: Original strand, 7337515 - 7337602
Alignment:
Q  275 ctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    |||||| | |||| ||||||| |||||| |||||| ||| | |||| ||||||| ||||||||| |||||||||||||||||||||||    
T  7337515 ctaaaaatataaagggtgaatctgcgaacaaactcacaacagccaagttaatagcatgcaacagcaaaatgcctacaaataatatgat 7337602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 283 - 362
Target Start/End: Complemental strand, 45415790 - 45415711
Alignment:
Q  283 gtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||| |||||||||||||| |||||| ||| | ||||||||||| ||| |||| | |||||||||||||||||||||||    
T  45415790 gtaaagggtgaatatgcgaacaaactcacaacacccaaattaatattatacaacggcaaaatgcctacaaataatatgat 45415711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 362
Target Start/End: Complemental strand, 14489540 - 14489425
Alignment:
Q  247 atcaaatataataacatgttcaacattcctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgc 346  Q
    |||||||| ||| ||||| | |||||  ||||||  ||||| ||||||||||| ||||||||| ||||| |||| ||||||  || |||||  ||||| |    
T  14489540 atcaaatacaatgacatgattaacatcgctaaaaacgtaaagggtgaatatgctaataaactctcaatacccaagttaataacatacaacaacaaaatac 14489441  T
Q  347 ctacaaataatatgat 362  Q
    ||||||||||||||||    
T  14489440 ctacaaataatatgat 14489425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 283 - 362
Target Start/End: Complemental strand, 14872871 - 14872792
Alignment:
Q  283 gtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||| |||||||||||||| |||||| ||  |||||| ||||||| || |||| | |||||||||||||||||||||||    
T  14872871 gtaaagggtgaatatgcgaacaaactcacagcatccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 14872792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 256 - 362
Target Start/End: Original strand, 36775543 - 36775649
Alignment:
Q  256 aataacatgttcaacattcctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaata 355  Q
    ||||||||| |||| ||  ||||||  ||| | ||||||| |||||| |||||| ||| |||||| ||||||| || |||| | ||||||||||||||||    
T  36775543 aataacatgatcaatatcgctaaaaacgtatagggtgaatctgcgaacaaactcacaacatccaagttaatagcatacaacggcaaaatgcctacaaata 36775642  T
Q  356 atatgat 362  Q
    |||||||    
T  36775643 atatgat 36775649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 256 - 362
Target Start/End: Complemental strand, 48750444 - 48750338
Alignment:
Q  256 aataacatgttcaacattcctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaata 355  Q
    ||||||||| |||| ||  ||||||  ||| | |||||||||||||| |||||| ||| | |||| ||||||| || |||| | ||||||||||||||||    
T  48750444 aataacatgatcaatatcgctaaaaacgtatagggtgaatatgcgaacaaactcacaacacccaagttaatagcatacaacggcaaaatgcctacaaata 48750345  T
Q  356 atatgat 362  Q
    |||||||    
T  48750344 atatgat 48750338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 265 - 356
Target Start/End: Complemental strand, 5601015 - 5600924
Alignment:
Q  265 ttcaacattcctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataa 356  Q
    ||||||||| |||||| |||||||  ||||| |||||| |||||| |||||||||||| ||||  || ||||   |||||||||||||||||    
T  5601015 ttcaacattgctaaaaatgtaaataatgaatctgcgaacaaactcacaatatccaaataaataacatacaacgataaaatgcctacaaataa 5600924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 362
Target Start/End: Complemental strand, 9341958 - 9341879
Alignment:
Q  283 gtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||| ||||||| |  |||||||||| |||||| ||| |||||||||| |||||  ||||| |||||||||||||||||    
T  9341958 gtaaaaggtgaatctaagaataaactcacaatattcaagttaatagtatacaacaacaaaatacctacaaataatatgat 9341879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 362
Target Start/End: Complemental strand, 18939591 - 18939472
Alignment:
Q  244 tacatcaaatataataacatgttcaacattcctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaac-agaaaa 342  Q
    ||||||| ||| |||||||||||||| |||  ||| |  ||||||||||||| |||||| ||||||  | ||||||| ||||||| || |||| | ||||    
T  18939591 tacatcagatacaataacatgttcaatattgttaagaacgtaaatggtgaatctgcgaacaaactcaaattatccaagttaatagcatacaacgacaaaa 18939492  T
Q  343 atgcctacaaataatatgat 362  Q
    |||||| |||||||| ||||    
T  18939491 atgcctgcaaataatttgat 18939472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 291 - 362
Target Start/End: Complemental strand, 19061133 - 19061062
Alignment:
Q  291 tgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||| |||||| |||||| ||| |||||| ||||||| || |||| | |||||||||||||||||||||||    
T  19061133 tgaatgtgcgaacaaactcacaacatccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 19061062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 362
Target Start/End: Original strand, 37720009 - 37720088
Alignment:
Q  283 gtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||| ||||||| ||| || |||||| ||| | |||| ||||||| || | ||||||||||||||||||||||||||||    
T  37720009 gtaaaaggtgaatttgcaaacaaactcacaacacccaagttaatagcattccacagaaaaatgcctacaaataatatgat 37720088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 362
Target Start/End: Complemental strand, 31317995 - 31317889
Alignment:
Q  256 aataacatgttcaacattcctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaata 355  Q
    |||| ||||||||||||   |||||  ||||| ||||||| |||||| |||||| ||  | |||| ||||||| |||||||   ||||||||||||||||    
T  31317995 aatatcatgttcaacatcgttaaaaacgtaaagggtgaatttgcgaacaaactcacatcacccaagttaataggatgcaacgataaaatgcctacaaata 31317896  T
Q  356 atatgat 362  Q
    |||||||    
T  31317895 atatgat 31317889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 362
Target Start/End: Original strand, 19596320 - 19596399
Alignment:
Q  283 gtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||| ||||||| |||||| ||||||| |  |||||| ||||||| ||  ||| | |||||||||||||||||||||||    
T  19596320 gtaaaaggtgaatctgcgaacaaactcgtagcatccaagttaatagcataaaacggcaaaatgcctacaaataatatgat 19596399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 362
Target Start/End: Complemental strand, 24583386 - 24583299
Alignment:
Q  275 ctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    |||||| |||||| | ||||| |||||| |||||| ||  | |||| ||||||| || |||| | |||||||||||||||||||||||    
T  24583386 ctaaaaatgtaaaggatgaatctgcgaacaaactcacatcacccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 24583299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 362
Target Start/End: Complemental strand, 31919213 - 31919142
Alignment:
Q  291 tgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||| |||||| |||||||||| |||||| ||||||| || ||||   |||||| ||||||||||||||||    
T  31919213 tgaatctgcgaacaaactcgcaacatccaagttaatagcatacaacgacaaaatgtctacaaataatatgat 31919142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 362
Target Start/End: Complemental strand, 34529298 - 34529227
Alignment:
Q  291 tgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||| |||||| |||||| ||  | |||| |||||||||| ||||| ||||||||||||||||||| ||||    
T  34529298 tgaatctgcgaacaaactcacatcacccaagttaatagtatacaacaaaaaaatgcctacaaataatgtgat 34529227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 362
Target Start/End: Original strand, 35484243 - 35484330
Alignment:
Q  275 ctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    |||||| |||||| || |||| |||||| |||||| ||| | |||| ||||||| || |||| | ||||||| |||||||||||||||    
T  35484243 ctaaaaatgtaaagggcgaatctgcgaacaaactcacaacacccaagttaatagcatacaacggcaaaatgcttacaaataatatgat 35484330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 362
Target Start/End: Complemental strand, 5984067 - 5983989
Alignment:
Q  284 taaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    |||| |||||||||||||| |||||| ||  | |||| ||||||| || ||||   |||||||||||||||||||||||    
T  5984067 taaagggtgaatatgcgaacaaactcacatcacccaagttaatagcatacaacgacaaaatgcctacaaataatatgat 5983989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 362
Target Start/End: Original strand, 13144665 - 13144751
Alignment:
Q  276 taaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||| |||||| ||||||| |||||| |||||| ||| |||||| ||||||| ||  ||  | |||||||||||||||| ||||||    
T  13144665 taaaaatgtaaagggtgaatctgcgaacaaactcacaacatccaagttaatagcataaaatggcaaaatgcctacaaatattatgat 13144751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 362
Target Start/End: Original strand, 34412925 - 34413031
Alignment:
Q  256 aataacatgttcaacattcctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaata 355  Q
    ||||||||| |||| ||  ||||||  ||| | ||||||| |||||| |||||| ||| | |||| ||||||  || |||| | ||||||||||||||||    
T  34412925 aataacatgatcaatatcgctaaaaacgtatagggtgaatctgcgaacaaactcacaacacccaagttaataacatacaaccgcaaaatgcctacaaata 34413024  T
Q  356 atatgat 362  Q
    |||||||    
T  34413025 atatgat 34413031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 362
Target Start/End: Complemental strand, 4413307 - 4413267
Alignment:
Q  322 ttaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||||| || |||||| |||||||||||||||||||||||    
T  4413307 ttaatagcatacaacagcaaaatgcctacaaataatatgat 4413267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 284 - 362
Target Start/End: Original strand, 31391614 - 31391692
Alignment:
Q  284 taaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    |||| ||||||| |||||| |||||| ||| |||||| ||||||| || ||||||||||||||||||| ||||||||||    
T  31391614 taaagggtgaatttgcgaacaaactcacaacatccaagttaatagcatacaacagaaaaatgcctacatataatatgat 31391692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 289 - 362
Target Start/End: Complemental strand, 14211449 - 14211376
Alignment:
Q  289 ggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||||| |||||| |||||| ||| | |||| ||||||| || ||||||||||||||||||||||||||||||    
T  14211449 ggtgaatctgcgaacaaactcacaacacccaagttaatagcatacaacagaaaaatgcctacaaataatatgat 14211376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 256 - 362
Target Start/End: Original strand, 2979139 - 2979245
Alignment:
Q  256 aataacatgttcaacattcctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaata 355  Q
    ||||||||| |||| ||  |||||| |||| | ||||||| |||||| |||||| ||| |||||| ||||||| || |||| | | ||||||||||||||    
T  2979139 aataacatgatcaatatcgctaaaaatgtatagggtgaatctgcgaacaaactcacaacatccaagttaatagcatacaacggcacaatgcctacaaata 2979238  T
Q  356 atatgat 362  Q
    |||||||    
T  2979239 atatgat 2979245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 362
Target Start/End: Original strand, 9113585 - 9113664
Alignment:
Q  283 gtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||| ||||||| |||||| ||||||  || | |||| ||||||| || |||| |||||||||||||||||||||||||    
T  9113585 gtaaagggtgaatctgcgaacaaactcagaacacccaagttaatagcatacaacggaaaaatgcctacaaataatatgat 9113664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 291 - 362
Target Start/End: Complemental strand, 13422153 - 13422082
Alignment:
Q  291 tgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    |||||||||||| |||||| ||| |||||| ||||||| ||  ||| |||||||||||||| ||||||||||    
T  13422153 tgaatatgcgaacaaactcacaacatccaagttaatagcataaaacggaaaaatgcctacatataatatgat 13422082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 362
Target Start/End: Complemental strand, 38598025 - 38597946
Alignment:
Q  283 gtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||| ||||||| |||||| |||||| ||| | |||| ||||||| || |||| | |||||||||||||||||||||||    
T  38598025 gtaaagggtgaatttgcgaacaaactcacaacacccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 38597946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 362
Target Start/End: Complemental strand, 19121179 - 19121061
Alignment:
Q  244 tacatcaaatataataacatgttcaacattcctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaa 343  Q
    ||||||| ||| |||||||||| ||||||  || |||  ||||| ||||||| |||||| |||||| ||  |||||||||||||  || ||| || ||||    
T  19121179 tacatcagatacaataacatgtccaacatctctgaaaacgtaaagggtgaatctgcgaacaaactcacatcatccaaattaatatcatacaagagcaaaa 19121080  T
Q  344 tgcctacaaataatatgat 362  Q
     | ||||||||||||||||    
T  19121079 cgtctacaaataatatgat 19121061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 362
Target Start/End: Original strand, 28540727 - 28540845
Alignment:
Q  244 tacatcaaatataataacatgttcaacattcctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaa 343  Q
    ||||||||| | ||||||||| |||| ||  ||||||  ||| | ||||||| |||||| |||||| ||  | |||| ||||||| || |||| ||||||    
T  28540727 tacatcaaagacaataacatgatcaatatcgctaaaaacgtatagggtgaatctgcgaacaaactcacagcacccaagttaatagcatacaacggaaaaa 28540826  T
Q  344 tgcctacaaataatatgat 362  Q
    || ||||||||||||||||    
T  28540827 tgtctacaaataatatgat 28540845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 359
Target Start/End: Complemental strand, 11867869 - 11867801
Alignment:
Q  291 tgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatat 359  Q
    ||||| |||||| || ||| ||||| |||||||||||| || |||||  ||||||||||||||||||||    
T  11867869 tgaatctgcgaacaagctcacaatacccaaattaatagcatacaacaacaaaatgcctacaaataatat 11867801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 362
Target Start/End: Complemental strand, 10722997 - 10722910
Alignment:
Q  275 ctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    |||||| |||||||||||||| | |||| |||||| ||| |  ||| ||||||  || || | |||||||||||||||||||||||||    
T  10722997 ctaaaaatgtaaatggtgaatctacgaacaaactcacaacactcaagttaataacatacagcggaaaaatgcctacaaataatatgat 10722910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 362
Target Start/End: Original strand, 11976787 - 11976874
Alignment:
Q  275 ctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    |||||| |||||| | ||||| |||||| |||||| ||| |||||| ||||||  ||  ||| | |||||||||||||||||||||||    
T  11976787 ctaaaaatgtaaaggatgaatctgcgaacaaactcacaacatccaagttaataacataaaacgggaaaatgcctacaaataatatgat 11976874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 362
Target Start/End: Original strand, 24229651 - 24229723
Alignment:
Q  290 gtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    |||||| |||||| |||||| ||  | |||| ||||||| || |||| | |||||||||||||||||||||||    
T  24229651 gtgaatctgcgaacaaactcacagcacccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 24229723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 256 - 362
Target Start/End: Complemental strand, 27856420 - 27856314
Alignment:
Q  256 aataacatgttcaacattcctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaata 355  Q
    ||||||||| |||| ||  ||||||  ||||| | ||||| |||||| |||||| ||  |||||| ||||||| ||||||| ||||||||||||||||||    
T  27856420 aataacatgatcaatatcgctaaaaacgtaaaagatgaatctgcgaacaaactcacatcatccaagttaatagcatgcaacggaaaaatgcctacaaata 27856321  T
Q  356 atatgat 362  Q
    |||||||    
T  27856320 atatgat 27856314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 275 - 362
Target Start/End: Complemental strand, 38142761 - 38142674
Alignment:
Q  275 ctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    |||||| |||||| ||||||||||| || |||||| ||  || ||| |||||||||| |||||  |||||||||||||||||||||||    
T  38142761 ctaaaaatgtaaagggtgaatatgcaaacaaactcacagcattcaagttaatagtatacaacaataaaatgcctacaaataatatgat 38142674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 275 - 362
Target Start/End: Original strand, 48650586 - 48650673
Alignment:
Q  275 ctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    |||||| |||||| ||||||| |||||| |||||| ||| | |||| ||||||| || |||| | |||||||||||||||||||||||    
T  48650586 ctaaaaatgtaaagggtgaatctgcgaacaaactcacaacacccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 48650673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 264 - 362
Target Start/End: Complemental strand, 30830222 - 30830124
Alignment:
Q  264 gttcaacattcctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||||||| | ||||| |||||| | ||||||||||||||||||| ||  || |||||||||||||| ||||   ||||| | |||||||||||||||    
T  30830222 gttcaacatccttaaaaatgtaaaagatgaatatgcgaataaactcacatcatacaaattaatagtatacaactataaaatccgtacaaataatatgat 30830124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 256 - 362
Target Start/End: Complemental strand, 42461004 - 42460898
Alignment:
Q  256 aataacatgttcaacattcctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaata 355  Q
    ||||||||| |||| ||  ||| || |||||| ||||||| |||||| |||||| || || |||| ||||||| || |||||  ||||||||||||||||    
T  42461004 aataacatgatcaatatcgctataaatgtaaagggtgaatctgcgaacaaactcacagtacccaagttaatagcatacaacaacaaaatgcctacaaata 42460905  T
Q  356 atatgat 362  Q
    |||||||    
T  42460904 atatgat 42460898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 362
Target Start/End: Original strand, 45568305 - 45568384
Alignment:
Q  283 gtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||| ||||||| ||||||||||||| ||  | |||| ||||||| || |||| | |||||||||||||||||||||||    
T  45568305 gtaaagggtgaatctgcgaataaactcacatcacccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 45568384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 287 - 362
Target Start/End: Original strand, 51303507 - 51303582
Alignment:
Q  287 atggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||||||| |||||| |||||| ||| | |||| ||||||| || |||| | |||||||||||||||||||||||    
T  51303507 atggtgaatctgcgaacaaactcacaacacccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 51303582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 337
Target Start/End: Original strand, 24175964 - 24176045
Alignment:
Q  256 aataacatgttcaacattcctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaaca 337  Q
    |||||||||||||||||  |||||| |||||| ||||||| ||| || |||||| ||||| |||| ||||||| || |||||    
T  24175964 aataacatgttcaacatcgctaaaaatgtaaagggtgaatttgcaaacaaactcacaatacccaatttaatagcatacaaca 24176045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 362
Target Start/End: Complemental strand, 51923944 - 51923876
Alignment:
Q  294 atatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||||||| |||||| ||| | |||| ||||||| || |||| | |||||||||||||||||||||||    
T  51923944 atatgcgaacaaactcacaacacccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 51923876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 362
Target Start/End: Original strand, 628791 - 628862
Alignment:
Q  291 tgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||| |||||| |||||| ||| | |||| ||||||| || |||| | |||||||||||||||||||||||    
T  628791 tgaatctgcgaacaaactcacaacacccaagttaatagaatacaacggcaaaatgcctacaaataatatgat 628862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 362
Target Start/End: Original strand, 38859980 - 38860051
Alignment:
Q  291 tgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||| |||||| |||||| ||| | |||| ||||||| || |||| | |||||||||||||||||||||||    
T  38859980 tgaatctgcgaacaaactcacaacacccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 38860051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 362
Target Start/End: Complemental strand, 43017108 - 43017037
Alignment:
Q  291 tgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    |||||||| |||||||||| ||| | | || ||||||| || |||| | |||||||||||||||||||||||    
T  43017108 tgaatatgtgaataaactcacaacacctaagttaatagcatacaacggcaaaatgcctacaaataatatgat 43017037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 362
Target Start/End: Original strand, 44959833 - 44959912
Alignment:
Q  283 gtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||| ||||||| ||| ||||||||| ||  |||||| ||||||| || |||  | |||||||||||||||||||||||    
T  44959833 gtaaagggtgaatctgcaaataaactcacagcatccaagttaatagcatacaatggcaaaatgcctacaaataatatgat 44959912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 362
Target Start/End: Original strand, 52922977 - 52923056
Alignment:
Q  283 gtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||| ||||||| |||||| |||||| ||  | |||| ||||||| || |||| | |||||||||||||||||||||||    
T  52922977 gtaaagggtgaatctgcgaacaaactcacagcagccaagttaatagcatacaacggtaaaatgcctacaaataatatgat 52923056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 362
Target Start/End: Original strand, 21289647 - 21289753
Alignment:
Q  256 aataacatgttcaacattcctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaata 355  Q
    ||||||||| |||| ||  ||||||  ||| | ||||||| |||||| |||||| ||  | |||| ||||||| || |||| | ||||||||||||||||    
T  21289647 aataacatgatcaatatcgctaaaaacgtatagggtgaatctgcgaacaaactcacagcacccaagttaatagcatacaacggcaaaatgcctacaaata 21289746  T
Q  356 atatgat 362  Q
    |||||||    
T  21289747 atatgat 21289753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 212
Target Start/End: Original strand, 633114 - 633143
Alignment:
Q  183 tttaatccaccaataaattcttactttttt 212  Q
    ||||||||||||||||||||||||||||||    
T  633114 tttaatccaccaataaattcttactttttt 633143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 362
Target Start/End: Complemental strand, 46220877 - 46220812
Alignment:
Q  297 tgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    |||||| |||||||||  | |||||||||| | || |||| | |||||||||||||||||||||||    
T  46220877 tgcgaacaaactcgcagcacccaaattaatggcatacaacggtaaaatgcctacaaataatatgat 46220812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 362
Target Start/End: Complemental strand, 29922282 - 29922206
Alignment:
Q  286 aatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||| |||| |||||| |||||| || | ||||| ||||||| || |||| | |||||||||||||| ||||||||    
T  29922282 aatggggaatctgcgaacaaactcacattttccaagttaatagcatacaacggcaaaatgcctacaaacaatatgat 29922206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 362
Target Start/End: Complemental strand, 29971435 - 29971359
Alignment:
Q  286 aatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||| |||| |||||| |||||| || | ||||| ||||||| || |||| | |||||||||||||| ||||||||    
T  29971435 aatggggaatctgcgaacaaactcacattttccaagttaatagcatacaacggcaaaatgcctacaaacaatatgat 29971359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 362
Target Start/End: Original strand, 50194178 - 50194274
Alignment:
Q  266 tcaacattcctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    |||||||  ||||||  ||||| | ||||| |||||| |||||| ||| |||||| ||||||| ||  ||| | |||||||||||||| ||||||||    
T  50194178 tcaacatcgctaaaaacgtaaaggatgaatctgcgaacaaactcacaacatccaagttaatagcatataacggcaaaatgcctacaaaaaatatgat 50194274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 242 - 362
Target Start/End: Complemental strand, 7986 - 7865
Alignment:
Q  242 agtacatcaaatataataacatgttcaacattcctaaaagtgta-aatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaa 340  Q
    ||||||||||||| |||||| |||| |||||| ||||||  ||| || |||||||||||||| |||||| ||| | |||| ||||||  || ||| || |    
T  7986 agtacatcaaatacaataacttgtttaacattgctaaaaacgtacaagggtgaatatgcgaacaaactcacaacacccaagttaataacatacaatagca 7887  T
Q  341 aaatgcctacaaataatatgat 362  Q
    |||| |||||||||||||||||    
T  7886 aaatccctacaaataatatgat 7865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 283 - 362
Target Start/End: Original strand, 11985094 - 11985173
Alignment:
Q  283 gtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||||| ||||| |||||| ||| || ||| |||||| ||||||| || |||||| |||||||||||||||||||||||    
T  11985094 gtaaatgatgaatttgcgaacaaattcacaacatccaagttaataggatacaacagcaaaatgcctacaaataatatgat 11985173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 362
Target Start/End: Complemental strand, 17151704 - 17151584
Alignment:
Q  242 agtacatcaaatataataacatgttcaacattcctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaa 341  Q
    ||||||||| ||| |||||||||||||| ||   |||||  ||||| |||||||||||| | |||||| ||| || ||| ||||||| || |||||  ||    
T  17151704 agtacatcagatacaataacatgttcaaaatcgttaaaaacgtaaagggtgaatatgcggacaaactcacaacattcaagttaatagcatacaacaacaa 17151605  T
Q  342 aatgcctacaaataatatgat 362  Q
    ||| ||||| |||||||||||    
T  17151604 aatacctactaataatatgat 17151584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 362
Target Start/End: Original strand, 18107570 - 18107690
Alignment:
Q  242 agtacatcaaatataataacatgttcaacattcctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaa 341  Q
    ||||||||| |||||||||||||||||  ||  ||||||  |||||  ||||||||||||| |||||| ||| |  ||| |||||| |||  |||   ||    
T  18107570 agtacatcacatataataacatgttcattatcactaaaaacgtaaagagtgaatatgcgaacaaactcacaacacgcaagttaataatataaaacgacaa 18107669  T
Q  342 aatgcctacaaataatatgat 362  Q
    |||||||||||||||||||||    
T  18107670 aatgcctacaaataatatgat 18107690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 266 - 362
Target Start/End: Complemental strand, 37994540 - 37994444
Alignment:
Q  266 tcaacattcctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||||| |||||||  ||||| | ||||| |||||| |||||| ||| | |||| ||||||| ||  ||||| |||||||||||||||||||||||    
T  37994540 tcaacatccctaaaatcgtaaaagatgaatctgcgaacaaactcacaacacccaagttaatagcatataacagcaaaatgcctacaaataatatgat 37994444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 362
Target Start/End: Original strand, 4041455 - 4041534
Alignment:
Q  283 gtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||| ||||||| |||||| |||||| ||| | | || ||||||| ||||||||| |||||| ||||||||||||||||    
T  4041455 gtaaagggtgaatctgcgaacaaactcacaacacctaagttaatagcatgcaacagcaaaatggctacaaataatatgat 4041534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 362
Target Start/End: Complemental strand, 7646717 - 7646638
Alignment:
Q  283 gtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||| ||||||| |||||| |||||| ||| | |||| ||||||| || |||| | |||||||||||||||||||||||    
T  7646717 gtaaaaggtgaatctgcgaacaaactcacaacacccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 7646638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 362
Target Start/End: Complemental strand, 32190902 - 32190824
Alignment:
Q  284 taaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    |||||||||||| ||| ||||||||| ||| ||  || ||||||| || ||| |||||||||| |||||||||||||||    
T  32190902 taaatggtgaatctgcaaataaactcacaacatttaagttaatagcatacaatagaaaaatgcttacaaataatatgat 32190824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 362
Target Start/End: Original strand, 37876468 - 37876546
Alignment:
Q  284 taaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    |||||||||||| |||||| |||||||||  | |||| ||||||| || | || | |||||||||||||||||||||||    
T  37876468 taaatggtgaatctgcgaacaaactcgcatcacccaagttaatagcatacgacggcaaaatgcctacaaataatatgat 37876546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 362
Target Start/End: Original strand, 12554000 - 12554121
Alignment:
Q  242 agtacatcaaatataataacatgttcaacattcctaaaagt-gtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaa 340  Q
    |||| |||| ||| |||||||| ||||||||| ||||||   ||||| ||||||| |||||| |||||| ||| | |||| ||||||  || ||||   |    
T  12554000 agtatatcagatacaataacatattcaacattgctaaaaaacgtaaagggtgaatctgcgaacaaactcacaacacccaagttaatatcatacaacgaca 12554099  T
Q  341 aaatgcctacaaataatatgat 362  Q
    ||||||||||||||||||||||    
T  12554100 aaatgcctacaaataatatgat 12554121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 360
Target Start/End: Complemental strand, 31788695 - 31788618
Alignment:
Q  283 gtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatg 360  Q
    ||||| ||||||| |||||| |||||| ||  |||||| ||||||| || |||| | |||||||||||||||||||||    
T  31788695 gtaaagggtgaatctgcgaacaaactcacagcatccaagttaatagcatacaacggcaaaatgcctacaaataatatg 31788618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 362
Target Start/End: Complemental strand, 4778992 - 4778913
Alignment:
Q  283 gtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||| ||||||| |||||| |||||| ||  | |||||||||||  || |||| | |||||||||||||||||||||||    
T  4778992 gtaaagggtgaatctgcgaacaaactcacagcacccaaattaataacatacaacggcaaaatgcctacaaataatatgat 4778913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 362
Target Start/End: Complemental strand, 18763707 - 18763628
Alignment:
Q  283 gtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||| ||||||| |||||| |||||| ||| | |||| ||||||| ||  ||| | |||||||||||||||||||||||    
T  18763707 gtaaagggtgaatctgcgaacaaactcacaacacccaagttaatagcataaaacggcaaaatgcctacaaataatatgat 18763628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 362
Target Start/End: Complemental strand, 19598109 - 19597999
Alignment:
Q  252 atataataacatgttcaacattcctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctaca 351  Q
    ||||||||||||| |||||||| | ||||  |||||||   |||||||||| ||| || ||| |  ||| ||||||| || |||| | |||||| |||||    
T  19598109 atataataacatgatcaacattgcaaaaaacgtaaatgaanaatatgcgaacaaattcacaacactcaagttaatagcatacaacggtaaaatgtctaca 19598010  T
Q  352 aataatatgat 362  Q
    |||||||||||    
T  19598009 aataatatgat 19597999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 362
Target Start/End: Original strand, 27097268 - 27097347
Alignment:
Q  283 gtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||| ||||||| ||| || |||||| ||| | |||| |||||||||| |||| | ||||| |||||||||||||||||    
T  27097268 gtaaagggtgaatctgcaaacaaactcacaacacccaagttaatagtatacaacggcaaaattcctacaaataatatgat 27097347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 362
Target Start/End: Original strand, 29279431 - 29279510
Alignment:
Q  283 gtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    |||||||||||||||||||| |||||| ||| | |  | ||||||| ||  ||| | |||||||||||||||||||||||    
T  29279431 gtaaatggtgaatatgcgaacaaactcacaacaccatagttaatagcataaaacggcaaaatgcctacaaataatatgat 29279510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 362
Target Start/End: Original strand, 32448469 - 32448556
Alignment:
Q  275 ctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    |||||| | |||||| ||||| |  ||| |||||| ||| |||||| ||||||| || |||| | |||||||||||||||||||||||    
T  32448469 ctaaaaatataaatgatgaatctatgaacaaactcacaacatccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 32448556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 362
Target Start/End: Original strand, 33585604 - 33585675
Alignment:
Q  291 tgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    |||||||||||| |||||| ||| | |||| ||||||| || |||| | ||||||| |||||||||||||||    
T  33585604 tgaatatgcgaacaaactcacaacacccaagttaatagcatacaacggcaaaatgcatacaaataatatgat 33585675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 362
Target Start/End: Complemental strand, 3309211 - 3309105
Alignment:
Q  256 aataacatgttcaacattcctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaata 355  Q
    ||||||||| |||| ||  ||||||  ||| | ||||||| ||||||||||||| ||  | |||| ||||||| || |||| | |||||| |||||||||    
T  3309211 aataacatgatcaatatcgctaaaaacgtatagggtgaatctgcgaataaactcacagcacccaagttaatagcatacaacggcaaaatgactacaaata 3309112  T
Q  356 atatgat 362  Q
    |||||||    
T  3309111 atatgat 3309105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 362
Target Start/End: Original strand, 10237050 - 10237156
Alignment:
Q  256 aataacatgttcaacattcctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaata 355  Q
    ||||||||| |||| ||  ||||||  ||| | ||||||| |||||| |||||| ||| | |||| ||||||| || ||||   ||||||||||||||||    
T  10237050 aataacatgatcaatatcgctaaaaacgtatagggtgaatctgcgaacaaactcacaacacccaagttaatagcatacaacgacaaaatgcctacaaata 10237149  T
Q  356 atatgat 362  Q
    |||||||    
T  10237150 atatgat 10237156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 362
Target Start/End: Complemental strand, 10929903 - 10929825
Alignment:
Q  284 taaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    |||| ||||||||||| || |||||| ||  |||||| ||||||| || |||||  |||||||||| ||||||||||||    
T  10929903 taaagggtgaatatgcaaacaaactcacagcatccaagttaatagcattcaacaacaaaatgcctataaataatatgat 10929825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 362
Target Start/End: Original strand, 12677313 - 12677390
Alignment:
Q  284 taaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    |||| ||||||| |||||||||||||  |||| |||| ||||||| ||  ||| ||||||||||||| |||||||||||    
T  12677313 taaagggtgaatctgcgaataaactcataatacccaagttaatagcataaaacggaaaaatgcctac-aataatatgat 12677390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 353
Target Start/End: Complemental strand, 27477407 - 27477319
Alignment:
Q  265 ttcaacattcctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaa 353  Q
    |||||||||  ||||| |||||||| ||||| |||||| | |||| ||| |||||| ||||||||||  ||| | | ||||||||||||    
T  27477407 ttcaacattgttaaaaatgtaaatgatgaatctgcgaacatactcacaacatccaagttaatagtatttaacggtataatgcctacaaa 27477319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 362
Target Start/End: Complemental strand, 43853731 - 43853613
Alignment:
Q  244 tacatcaaatataataacatgttcaacattcctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaa 343  Q
    ||||||| ||| ||||||||  |||||||  |||||| |||||||||| ||| |||||| |||||| ||| |||||| ||||||  || |||||  ||||    
T  43853731 tacatcagatacaataacatactcaacatcgctaaaaatgtaaatggttaatctgcgaacaaactcacaacatccaagttaataacatacaacaacaaaa 43853632  T
Q  344 tgcctacaaataatatgat 362  Q
    |||  ||||||||||||||    
T  43853631 tgctgacaaataatatgat 43853613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 256 - 362
Target Start/End: Original strand, 52060756 - 52060862
Alignment:
Q  256 aataacatgttcaacattcctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaata 355  Q
    ||||||||||||||||   |||||| ||||||  |||||| ||| || ||||||  || || |||||||||||||| |||||  |||||||||||||| |    
T  52060756 aataacatgttcaacaacactaaaaatgtaaaatgtgaatctgcaaacaaactcataacattcaaattaatagtatacaacaacaaaatgcctacaaaaa 52060855  T
Q  356 atatgat 362  Q
    |||||||    
T  52060856 atatgat 52060862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 289 - 362
Target Start/End: Complemental strand, 36194951 - 36194878
Alignment:
Q  289 ggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||||| |||||| |||||| ||| |||||| ||||||| || |||| | |||||||||||||||||||||||    
T  36194951 ggtgaatctgcgaacaaactcacaacatccaagttaatagcatacaacggcaaaatgcctacaaataatatgat 36194878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 362
Target Start/End: Original strand, 48257492 - 48257571
Alignment:
Q  283 gtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||| ||||||| |||||| |||||| ||| |||||| ||||||| || |||| | ||||| |||||||||||||||||    
T  48257492 gtaaagggtgaatctgcgaacaaactcacaaaatccaagttaatagcatacaacggcaaaatacctacaaataatatgat 48257571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 358
Target Start/End: Complemental strand, 2521028 - 2520953
Alignment:
Q  283 gtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataata 358  Q
    ||||| ||||||| |||||| |||||| ||| | |||| ||||||| || |||| | |||||||||||||||||||    
T  2521028 gtaaagggtgaatctgcgaacaaactcacaacacccaagttaatagcatacaacggcaaaatgcctacaaataata 2520953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 362
Target Start/End: Original strand, 19853372 - 19853451
Alignment:
Q  283 gtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||| ||||||| |||||| |||||| ||| | |||| ||||||| || |||| | |||||||||| ||||||||||||    
T  19853372 gtaaagggtgaatctgcgaacaaactcacaacacccaagttaatagcatacaacggcaaaatgcctagaaataatatgat 19853451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 362
Target Start/End: Original strand, 51888063 - 51888150
Alignment:
Q  275 ctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    |||||| |||||| |||| ||||||||| |||||| ||| | | || ||||||| ||||||  | |||| ||||||||||||||||||    
T  51888063 ctaaaaatgtaaagggtggatatgcgaacaaactcacaacacctaagttaatagcatgcaatggcaaaacgcctacaaataatatgat 51888150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 359
Target Start/End: Original strand, 31891153 - 31891223
Alignment:
Q  289 ggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatat 359  Q
    ||||||| |||||| |||||| ||| | |||| ||||||| || |||| | ||||||||||||||||||||    
T  31891153 ggtgaatttgcgaacaaactcacaacacccaagttaatagcatacaacggcaaaatgcctacaaataatat 31891223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 362
Target Start/End: Complemental strand, 33921294 - 33921224
Alignment:
Q  292 gaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||||||||| |||||| ||| |||||| ||||||| || ||||   | |||||||||||||||||||||    
T  33921294 gaatatgcgaacaaactcacaacatccaagttaatagcatacaactatacaatgcctacaaataatatgat 33921224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 362
Target Start/End: Complemental strand, 43095892 - 43095798
Alignment:
Q  268 aacattcctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||| |||||||  ||||||| ||||| |||||| |||||| ||  |||||||||||||| || ||||   ||||| ||||||||| |||||||    
T  43095892 aacatccctaaaaacgtaaatgatgaatctgcgaacaaactcacatcatccaaattaatagcatacaactacaaaatacctacaaatgatatgat 43095798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 362
Target Start/End: Original strand, 12199533 - 12199632
Alignment:
Q  262 atgttcaacattcctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatga 361  Q
    |||||||||||  ||| ||  ||||||||||||| |||||| |||||| ||| | |||| | ||||  || |||||| ||||| ||||||||||||||||    
T  12199533 atgttcaacatcgctacaaacgtaaatggtgaatctgcgaacaaactcacaacacccaagt-aataacatacaacagtaaaatacctacaaataatatga 12199631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 327
Target Start/End: Original strand, 52097756 - 52097800
Alignment:
Q  283 gtaaatggtgaatatgcgaataaactcgcaatatccaaattaata 327  Q
    ||||| ||||||||||||||||||||| ||| |||||| ||||||    
T  52097756 gtaaagggtgaatatgcgaataaactcacaacatccaagttaata 52097800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 362
Target Start/End: Original strand, 18904 - 19021
Alignment:
Q  244 tacatcaaatataataacatgttcaacattcctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaa 343  Q
    ||||||| ||| ||||||||| ||||||| ||| ||| | |||| ||||||| | |||||||| ||  |  | ||||||||||||||| |||| | ||||    
T  18904 tacatcagatacaataacatgatcaacatccctgaaaatctaaagggtgaatttacgaataaattcatagca-ccaaattaatagtatacaacggcaaaa 19002  T
Q  344 tgcctacaaataatatgat 362  Q
    ||| |||||||||||||||    
T  19003 tgcatacaaataatatgat 19021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0884 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0884
Description:

Target: scaffold0884; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 362
Target Start/End: Original strand, 1833 - 1912
Alignment:
Q  283 gtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||| ||||||| |||||| ||||||  || | |||| ||||||  || |||||| |||||||||||||||||||||||    
T  1833 gtaaagggtgaatctgcgaacaaactcataacacccaagttaataacatacaacagcaaaatgcctacaaataatatgat 1912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 362
Target Start/End: Complemental strand, 1573 - 1494
Alignment:
Q  283 gtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||| ||||||| ||| || |||||| ||| |||||| ||||||| ||  ||| | |||||||||||||||||||||||    
T  1573 gtaaagggtgaatctgcaaacaaactcacaacatccaagttaatagcataaaacggcaaaatgcctacaaataatatgat 1494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 362
Target Start/End: Complemental strand, 6267 - 6180
Alignment:
Q  275 ctaaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    |||||| |||||| ||||||| ||| || |||||| ||| |||||| |||||||  || ||||  |||||| ||||||||||||||||    
T  6267 ctaaaaatgtaaaaggtgaatctgcaaacaaactcacaacatccaagttaatagcttgtaacaacaaaatgtctacaaataatatgat 6180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 362
Target Start/End: Complemental strand, 51012 - 50926
Alignment:
Q  276 taaaagtgtaaatggtgaatatgcgaataaactcgcaatatccaaattaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||| |||||| ||||||| |||||| |||||| ||  | |||| ||||||| || |||  | |||||||||||||||||||||||    
T  51012 taaaaatgtaaagggtgaatctgcgaacaaactcacagcacccaagttaatagcatacaatggcaaaatgcctacaaataatatgat 50926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 362
Target Start/End: Original strand, 92395 - 92435
Alignment:
Q  322 ttaatagtatgcaacagaaaaatgcctacaaataatatgat 362  Q
    ||||||||||||||||  |||||||||||||| ||||||||    
T  92395 ttaatagtatgcaacaacaaaatgcctacaaacaatatgat 92435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University