View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20678_low_11 (Length: 262)
Name: NF20678_low_11
Description: NF20678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20678_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 564929 - 564673
Alignment:
| Q |
1 |
aattatcctatttaattaaccaaatcaaccttccattaacacagatcagagcctaaactaatcaaatttccatggaaagaaaaacacacattgctgtggt |
100 |
Q |
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| T |
564929 |
aattatcttatttaattaaccaaatcaaccttccattaacacggatcagagcctaaactaatcaaatttccatggaaagaaaaacacacattgctgtggt |
564830 |
T |
|
| Q |
101 |
ttcagtccccattgtgagtcatcaaatagcaatttctgagttcatcaagaaactccttaatcttcatcctaacaagtttcacatcaccttaatcattcca |
200 |
Q |
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| T |
564829 |
ttcagtccccattgtgagtcatcaaatagcaatttctgagttcatcaagaaactccttaatcttcatcctaacaagtttcacatcaccttaatcattcca |
564730 |
T |
|
| Q |
201 |
gtactagattcactttccaatgcttccaaatccattattgcttctctttcttctctc |
257 |
Q |
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| T |
564729 |
gtactagattcactttccaatgcttccaaatccattattgcttctctttcttctctc |
564673 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 107
Target Start/End: Complemental strand, 874194 - 874139
Alignment:
| Q |
52 |
cctaaactaatcaaatttccatggaaagaaaaacacacattgctgtggtttcagtc |
107 |
Q |
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||||||||||||||||||||||||| ||||||||| ||||||| |||||| |||| |
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| T |
874194 |
cctaaactaatcaaatttccatggatagaaaaacattcattgctttggtttaagtc |
874139 |
T |
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