View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20678_low_13 (Length: 257)

Name: NF20678_low_13
Description: NF20678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20678_low_13
NF20678_low_13
[»] chr3 (11 HSPs)
chr3 (12-242)||(37633222-37633452)
chr3 (116-195)||(37638697-37638780)
chr3 (116-195)||(37635783-37635866)
chr3 (116-195)||(37644071-37644154)
chr3 (195-242)||(37636283-37636330)
chr3 (195-242)||(37639197-37639244)
chr3 (195-242)||(37644571-37644618)
chr3 (195-242)||(37647484-37647531)
chr3 (195-242)||(37650396-37650443)
chr3 (116-195)||(37646984-37647067)
chr3 (116-195)||(37649897-37649980)


Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 12 - 242
Target Start/End: Original strand, 37633222 - 37633452
Alignment:
Q  12 agaactattatttgcatttaaattgttaggttttgcagtcatatattatctaaatatatattgattcaaatatacgcacttgatcattatttaatctaag 111  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||  |||||||||||||||| ||||    
T  37633222 agaactattatttgcatttaaattgttaggttttgcagtcgtatattatctaaatatatattgattcgaatatacgcgtttgatcattatttaatttaag 37633321  T
Q  112 aggaatcatattataattaaaatgagagcgtattttggttagaagaacatctactaaggagaaaagagaagagaattggatattgtaaattgaatggtta 211  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37633322 aggaatcatattataattaaaatgagagcgtattttgattagaagaacatctactaaggagaaaagagaagagaattggatattgtaaattgaatggtta 37633421  T
Q  212 agttaatggaacatattctacataacatatt 242  Q
    |||||||||||||||||||||||||||||||    
T  37633422 agttaatggaacatattctacataacatatt 37633452  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 116 - 195
Target Start/End: Original strand, 37638697 - 37638780
Alignment:
Q  116 atcatattataattaaaatgagagcgtattttggttagaagaacatc----tactaaggagaaaagagaagagaattggatatt 195  Q
    |||| ||||| |||||||||||||  |||||||||||||||||||||    |||| ||||||||||||||||||||||||||||    
T  37638697 atcacattatgattaaaatgagagactattttggttagaagaacatctacgtactgaggagaaaagagaagagaattggatatt 37638780  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 195
Target Start/End: Original strand, 37635783 - 37635866
Alignment:
Q  116 atcatattataattaaaatgagagcgtattttggttagaagaacatc----tactaaggagaaaagagaagagaattggatatt 195  Q
    |||| ||||| |||||| ||||||  |||||||||||||||||||||    |||| ||||||||||||||||||||||||||||    
T  37635783 atcacattatgattaaattgagagactattttggttagaagaacatctacgtactgaggagaaaagagaagagaattggatatt 37635866  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 195
Target Start/End: Original strand, 37644071 - 37644154
Alignment:
Q  116 atcatattataattaaaatgagagcgtattttggttagaagaacatc----tactaaggagaaaagagaagagaattggatatt 195  Q
    |||| ||||| |||||||||||||  || ||||||||||||||||||    |||| ||||||||||||||||||||||||||||    
T  37644071 atcacattatgattaaaatgagagactactttggttagaagaacatctacgtactgaggagaaaagagaagagaattggatatt 37644154  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 37636283 - 37636330
Alignment:
Q  195 tgtaaattgaatggttaagttaatggaacatattctacataacatatt 242  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||    
T  37636283 tgtaaattcaatggttaagttaatggaacatattctacttaacatatt 37636330  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 37639197 - 37639244
Alignment:
Q  195 tgtaaattgaatggttaagttaatggaacatattctacataacatatt 242  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||    
T  37639197 tgtaaattcaatggttaagttaatggaacatattctacttaacatatt 37639244  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 37644571 - 37644618
Alignment:
Q  195 tgtaaattgaatggttaagttaatggaacatattctacataacatatt 242  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||    
T  37644571 tgtaaattcaatggttaagttaatggaacatattctacttaacatatt 37644618  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 37647484 - 37647531
Alignment:
Q  195 tgtaaattgaatggttaagttaatggaacatattctacataacatatt 242  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||    
T  37647484 tgtaaattcaatggttaagttaatggaacatattctacttaacatatt 37647531  T

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Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 37650396 - 37650443
Alignment:
Q  195 tgtaaattgaatggttaagttaatggaacatattctacataacatatt 242  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||    
T  37650396 tgtaaattcaatggttaagttaatggaacatattctacttaacatatt 37650443  T

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Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 195
Target Start/End: Original strand, 37646984 - 37647067
Alignment:
Q  116 atcatattataattaaaatgagagcgtattttggttagaagaacatc----tactaaggagaaaagagaagagaattggatatt 195  Q
    |||| ||||| |||||||||||||  || ||||||||||||||||||    |||| ||||||||| ||||||||||||||||||    
T  37646984 atcacattatgattaaaatgagagactactttggttagaagaacatctacgtactgaggagaaaatagaagagaattggatatt 37647067  T

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Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 195
Target Start/End: Original strand, 37649897 - 37649980
Alignment:
Q  116 atcatattataattaaaatgagagcgtattttggttagaagaacatc----tactaaggagaaaagagaagagaattggatatt 195  Q
    |||| ||||| |||||||||||||  || ||||||||||||||||||    |||| |||||||| |||||||||||||||||||    
T  37649897 atcacattatgattaaaatgagagactactttggttagaagaacatctacgtactgaggagaaatgagaagagaattggatatt 37649980  T

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