View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20678_low_18 (Length: 218)
Name: NF20678_low_18
Description: NF20678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20678_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 37632649 - 37632864
Alignment:
| Q |
1 |
ttcttcatttttgttgtttttctcgatgaattaaaatattaaaaactctgccgcaagcatcacaacaagatacctctacccaccttctatgaagggttgg |
100 |
Q |
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| T |
37632649 |
ttctgcatttttgttgtttttctcgatgaattaaaatattaaaaactctgccgcaagcatcataacaagataactctacccaccttctatgaagggttgg |
37632748 |
T |
|
| Q |
101 |
aaaaggcttccactatatgtgctcgaa-gggggacaatacaccatacaaagtcatacaccaatgacaaggcatacaaagataacccaaaaattgcctgcc |
199 |
Q |
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| T |
37632749 |
aaagggcttacactatatgtgctcgaaggggggacaatacaccatacacagtcatacaccaatgacaaggcatacaaagataaccccaaaattgcctgcc |
37632848 |
T |
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| Q |
200 |
agagagtagccataca |
215 |
Q |
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|||||||||||||||| |
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| T |
37632849 |
agagagtagccataca |
37632864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 183
Target Start/End: Original strand, 28697333 - 28697399
Alignment:
| Q |
117 |
atgtgctcgaagggggacaatacaccatacaaagtcatacaccaatgacaaggcatacaaagataac |
183 |
Q |
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| T |
28697333 |
atgtgttcgaaggtgtacaatagatcatacaaagacatacaccaatggcaaggcatacaaagataac |
28697399 |
T |
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