View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20678_low_19 (Length: 217)
Name: NF20678_low_19
Description: NF20678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20678_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 37633067 - 37632866
Alignment:
| Q |
1 |
catttcagtcctaaaggtgttttggtgcagccgcaagttttgatttgctgctatttctgctatgctgctaattttctggttttggtggtgtttttgtaca |
100 |
Q |
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| T |
37633067 |
catttcagtcctaaaggtgttttggtgcagccacaagttttgatttgctgctatttctgctatgctgttaattttctggttttggtggtgtttttgtaca |
37632968 |
T |
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| Q |
101 |
gcagtaagttatgtttgctactatttttgtttgtttgagtcctagggtgttcatggttgttttgaggttcatgtattcgtgggttagcaacatgtttttg |
200 |
Q |
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| T |
37632967 |
gcaaaaagttatatttgctactatttttgtttgtttgagtcctagggtgttcatggttgttttgaggttcatgtattcgtgggttagcaacatgtttttg |
37632868 |
T |
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| Q |
201 |
gt |
202 |
Q |
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|| |
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| T |
37632867 |
gt |
37632866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 114 - 202
Target Start/End: Complemental strand, 45220676 - 45220588
Alignment:
| Q |
114 |
tttgctactatttttgtttgtttgagtcctagggtgttcatggttgttttgaggttcatgtattcgtgggttagcaacatgtttttggt |
202 |
Q |
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| T |
45220676 |
tttgctgctatttttgtttgtttgagtcctagggtgtccatggttgttttatggttcatgtattggtgagttagcaacctgtttttggt |
45220588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 28697503 - 28697429
Alignment:
| Q |
132 |
tgtttgagtcctagggtgttcatggttgttttgaggttcatgtattcgtgggttagcaacatgtttttggtctgt |
206 |
Q |
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| T |
28697503 |
tgtttgagtcctatggtgtccgtggttgttttaaggttcttgtattggtgaattagcaacctgtttttggtctgt |
28697429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 55 - 201
Target Start/End: Complemental strand, 18329884 - 18329737
Alignment:
| Q |
55 |
ttctgctatgctgctaattttctggttttggtggtgtttttgtacagcagtaagttatg-tttgctactatttttgtttgtttgagtcctagggtgttca |
153 |
Q |
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||||||||||||||||||||| ||||||||| ||||| || |||||| ||||| | |||||| ||||||||||||||| ||||||| ||||| || |
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| T |
18329884 |
ttctgctatgctgctaattttacacttttggtggggttttggtgcagcagaaagttctaatttgctgctatttttgtttgttcaagtcctatggtgtcca |
18329785 |
T |
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| Q |
154 |
tggttgttttgaggttcatgtattcgtgggttagcaacatgtttttgg |
201 |
Q |
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|| | |||| ||||||||||||| ||| ||||||||| ||||||||| |
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| T |
18329784 |
tgttgcttttaaggttcatgtattggtgagttagcaacctgtttttgg |
18329737 |
T |
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