View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20678_low_7 (Length: 313)
Name: NF20678_low_7
Description: NF20678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20678_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 69 - 304
Target Start/End: Complemental strand, 24396707 - 24396472
Alignment:
| Q |
69 |
tgcattccttggattcgaaaatatgtctacataacttgaagaaattatatatatgtagggtttagaaatacctcatctctaaaagcttcaagacggtgtt |
168 |
Q |
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| T |
24396707 |
tgcattccttggattcgaaaatatgtctacataacttgaagaaattatatatatgtagggtttagaaatacctcatctctaaaagcttcaagacggtgtt |
24396608 |
T |
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| Q |
169 |
tccctaaatcttgcatgagggccatgaagatatcattctctttttccactaggaaacgacgcaacccttttagttgtgattctctccaagatgcttcctt |
268 |
Q |
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| T |
24396607 |
tccctaaatcttgcatgagggccatgaagatatcattctctttttccactaggaaacgacgcaacccttttagttgtgattctctccaagatgcttcctt |
24396508 |
T |
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| Q |
269 |
tgttataccactcctaaaatattctctcatattctt |
304 |
Q |
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| T |
24396507 |
tgttataccactcctaaaatattctctcatattctt |
24396472 |
T |
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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 227 - 291
Target Start/End: Complemental strand, 41842481 - 41842417
Alignment:
| Q |
227 |
acgcaacccttttagttgtgattctctccaagatgcttcctttgttataccactcctaaaatatt |
291 |
Q |
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| T |
41842481 |
acgcaacccttttagttgtgattctctccatgatgtttcttttgtttttccactcccataatatt |
41842417 |
T |
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