View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20678_low_8 (Length: 291)
Name: NF20678_low_8
Description: NF20678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20678_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 10 - 276
Target Start/End: Complemental strand, 51912907 - 51912642
Alignment:
| Q |
10 |
acatcatcaaagttaacaatacttccttctcaattattactaattaccggttatttccaaatgtcttattccaaacgttattgagcttgaatgaccacta |
109 |
Q |
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| T |
51912907 |
acatcatcaaagttaacaatacttccttctcaattattactaattaccggttatttccaaatgtcttattccaaacgttattgagcttgaatgaccacta |
51912808 |
T |
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| Q |
110 |
attggtgtaccgaatgaagagtcatttcccgtgtgtcctgcctgtgctctgtgctctgtgtgtgtcagttatgcagaaagnnnnnnnnggcagctcacac |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
51912807 |
attggtgtaccgaatgaagagtcatttcccgtgtgtcctgcctgtgctctgtgctctgtgtgtgtcagttatgcagaaa-aaaaaaaaggcagctcacac |
51912709 |
T |
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| Q |
210 |
tcactcacacccctcacttattttcctgccgtgcacccaatttgattatttcatcgatcatcaaatt |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51912708 |
tcactcacacccctcacttattttcctgccgtgcacccaatttgattatttcatcgatcatcaaatt |
51912642 |
T |
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