View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20679_high_3 (Length: 364)
Name: NF20679_high_3
Description: NF20679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20679_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 8 - 350
Target Start/End: Complemental strand, 54453905 - 54453564
Alignment:
| Q |
8 |
aatgttcggaatcttttattcattttttgtctggtctttttctaaccctaataacaaatgagtgtcttggccttgaattgaacaattattactgtcacaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
54453905 |
aatgttcggaatcttttattcattttttgtctggtctttttctaaccctaataacaaatgagtgtcgtggccttgaattgaacaattattactgtcacaa |
54453806 |
T |
|
| Q |
108 |
atgtttgggtgagtatagtctccactctccaccacatatgcttaggacccataacaaactaatttggctaactctcaattcttggtggtattagactgtc |
207 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
54453805 |
atgtttaggtgagtatagtctccactctccaccacatatgcttaggacccataacaaactaatttggctaactctcaattcttggtggtattagattgtc |
54453706 |
T |
|
| Q |
208 |
acacatgtcttggtgcactatggccatcgcaatagtgggactaagttttgcctccaccacatatgcttccgacacactgcaaaattatttttgttggaac |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54453705 |
acacatgtcttggtgcactatggccatcgcaatagtgggactaagttttgcctccaccacatatgcttccgacacactgcaaaattatttttgttggaac |
54453606 |
T |
|
| Q |
308 |
tgaaaaataaatgaatatctctcctatattcaacattgtatat |
350 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
54453605 |
tgaaaaataaatgaatatc-ctcctatattcaacattgtatat |
54453564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University