View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20679_high_7 (Length: 259)
Name: NF20679_high_7
Description: NF20679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20679_high_7 |
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| [»] scaffold0171 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 2 - 249
Target Start/End: Original strand, 54453923 - 54454170
Alignment:
| Q |
2 |
aaatacttgtgagattatctaattatttatttgtaggtttaaatgcatttttaacatcttgatttcttaaaagttgctattttggccccctaacaaaaca |
101 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
54453923 |
aaatacttgtgagattatctaattatttatttgtaggcttaaatgcatttttaacctcttgacttcttaaaagttactattttggccccctaacaaaaca |
54454022 |
T |
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| Q |
102 |
attttaccctataactttagaaaatgttgcaaaatcgcttagaagacgtcacgtgtcccaaaacagggggccaaaaccgcttagaacccagtgaggagac |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
54454023 |
attttaccctataactttagaaaatgttgcaaaatcgcttagaagacgtcacgtgtcccaaaacagggggccaaaatcgcttagaacccattgaggagac |
54454122 |
T |
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| Q |
202 |
ccttgcgcaatcacaccactggacatcacaacacagacatggtctctg |
249 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
54454123 |
ccttgcgcaatcacaccaatggacatcacaacacagacatggtctctg |
54454170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 163
Target Start/End: Original strand, 21071531 - 21071596
Alignment:
| Q |
98 |
aacaattttaccctataactttagaaaatgttgcaaaatcgcttagaagacgtcacgtgtcccaaa |
163 |
Q |
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| T |
21071531 |
aacaattttaccccctaactttacaaaacgttgcaaaattgcttagtggacaccacgtgtcccaaa |
21071596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 34296407 - 34296483
Alignment:
| Q |
101 |
aattttaccctataactttagaaaatgttgcaaaatcgcttagaagacgtcacgtgtcccaaaacagggggccaaaa |
177 |
Q |
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| T |
34296407 |
aattttaccccttaattttacaaaatgttgaaaagctactgagaagacgtcacgtgttccaaaacagggagccaaaa |
34296483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 198 - 249
Target Start/End: Complemental strand, 25966767 - 25966716
Alignment:
| Q |
198 |
agacccttgcgcaatcacaccactggacatcacaacacagacatggtctctg |
249 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
25966767 |
agacccttgcgcaatcacaccactggacatcacaacatacacatggtctctg |
25966716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 32463041 - 32463093
Alignment:
| Q |
197 |
gagacccttgcgcaatcacaccactggacatcacaacacagacatggtctctg |
249 |
Q |
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|||||| |||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
32463041 |
gagacctttgcgcaatcacaccactggacatcacaccatagacatggtctctg |
32463093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 173
Target Start/End: Original strand, 22057314 - 22057391
Alignment:
| Q |
96 |
aaaacaattttaccctataactttagaaaatgttgcaaaatcgcttagaagacgtcacgtgtcccaaaacagggggcc |
173 |
Q |
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||||||||||||||| ||||||| | |||| ||||||||| | ||| || ||| ||||||||||||||||||||||| |
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| T |
22057314 |
aaaacaattttaccccataacttgataaaacgttgcaaaactgtttaaaaaacgccacgtgtcccaaaacagggggcc |
22057391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 174
Target Start/End: Complemental strand, 16233738 - 16233628
Alignment:
| Q |
70 |
aaaagttgctattttggccccctaacaaaacaat------tttaccctataactttagaaaatgttgcaaaatcgcttagaagacgtcacgtgtcccaaa |
163 |
Q |
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||||||||| |||||||||||||||||||| ||| ||||||| ||| ||| |||| ||||||| | ||| ||||||| |||||||||||||| |
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| T |
16233738 |
aaaagttgcgattttggccccctaacaaaaaaataaaaattttaccccttaaacttacaaaacattgcaaagttgctgagaagacatcacgtgtcccaaa |
16233639 |
T |
|
| Q |
164 |
acagggggcca |
174 |
Q |
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||||||||||| |
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| T |
16233638 |
acagggggcca |
16233628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 229
Target Start/End: Original strand, 27575725 - 27575756
Alignment:
| Q |
198 |
agacccttgcgcaatcacaccactggacatca |
229 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
27575725 |
agacccttgcgcaatcacaccactggacatca |
27575756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 177
Target Start/End: Complemental strand, 2374808 - 2374728
Alignment:
| Q |
96 |
aaaacaattttaccctataactttagaaaatgttgcaaaatcgcttagaagacgtcacgtgtcccaaaacagggggccaaaa |
177 |
Q |
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|
||||||||||| |||| |||||||||||| |||||||||| ||||| |||||| ||| ||| |||||||| |||||||| |
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| T |
2374808 |
aaaacaattttcccct-taactttagaaagtgttgcaaaactgcttaaaagacgccacatgtttgaaaacaggaggccaaaa |
2374728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 19499495 - 19499431
Alignment:
| Q |
31 |
tttgtaggtttaaatgcatttttaacatcttgatttcttaaaagttgctattttggccccctaac |
95 |
Q |
| |
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|||||||||||||| ||||||||||| | | | || | ||||||||| |||||||||||||||| |
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| T |
19499495 |
tttgtaggtttaaaagcatttttaaccccgtaacttttaaaaagttgcgattttggccccctaac |
19499431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 9246 - 9206
Alignment:
| Q |
131 |
caaaatcgcttagaagacgtcacgtgtcccaaaacaggggg |
171 |
Q |
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|||||| ||||||||||||||||||||||||||| |||||| |
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| T |
9246 |
caaaattgcttagaagacgtcacgtgtcccaaaaaaggggg |
9206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 159
Target Start/End: Complemental strand, 15726 - 15632
Alignment:
| Q |
70 |
aaaagttgctattttggccccctaacaaaa-----caattttaccctataactttagaaaatgttgcaaaatcgcttagaagacgtcacgtgtcc |
159 |
Q |
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||||||||| |||||| |||||||| |||| ||||||||||| |||||||| ||||||||||||| | | | ||||||||||| |||||| |
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|
| T |
15726 |
aaaagttgcaattttgaccccctaaaaaaatataacaattttaccccttaactttataaaatgttgcaaagttgttgagaagacgtcatgtgtcc |
15632 |
T |
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