View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20679_low_1 (Length: 587)
Name: NF20679_low_1
Description: NF20679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20679_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 49 - 500
Target Start/End: Complemental strand, 9500044 - 9499594
Alignment:
| Q |
49 |
aagttatgcaaaaacagaacaaagctcactgacatgtgaaaaaagaacagtgggagggatggccagcaacataccagaacggtcagcaaacagtaataaa |
148 |
Q |
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| T |
9500044 |
aagttatgcaaaa-cagaacaaagctcactgacatgtgaaaaaagaacagtgggagggatggccagcaacataccagaacggtcagcagacagtaataaa |
9499946 |
T |
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| Q |
149 |
caacaacctagccttatcccactaagtggatcaaacgacgccataatattctagcagacaataacaaaccatgtacagaaattgaaagtaggcaacaaat |
248 |
Q |
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| T |
9499945 |
caacaacctagccttatcccactgagtggatcaaacgacgccataatattctagcagacaataacagaccatgtacagaaattgaaagtaggcaacaaat |
9499846 |
T |
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| Q |
249 |
ggtggagtggaataaggccttcataaaaagtgggggttggtgatgggagaggctttggttcaaacccttagaggagtgggggatccacaaaaatgatagg |
348 |
Q |
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| T |
9499845 |
ggtggagtggaataaggccttcataaaaagtgggggttggtgatgggagaggctttggttcaaacccttagaggagtgggggatccacaaaaatgatagg |
9499746 |
T |
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| Q |
349 |
acaccataggtgggtcatgcagaagtggggaagtaattccccattttacatgcctgatgaaataacggtcacgcatcactccttggatgtgttgggcagc |
448 |
Q |
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| T |
9499745 |
acaccataggtgggtcatgcagaaatggggaagtaattccccattttacatgcctgatgaaataacggtcacgcaccactccttggatgcattggacagc |
9499646 |
T |
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| Q |
449 |
ggctacatttagctacccaaaatcggtgcaaccaactaccgtggcagagacc |
500 |
Q |
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| T |
9499645 |
ggctacatttagctacccaaaatcagtgcaaccaactaccgtggcagagacc |
9499594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 534 - 578
Target Start/End: Complemental strand, 9499596 - 9499552
Alignment:
| Q |
534 |
accaaatacggtaaatctaaacacagctgtttcacttagaattat |
578 |
Q |
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| T |
9499596 |
accaaatacggtaaatctaaacacagctgtttcacttagaattat |
9499552 |
T |
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