View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20679_low_2 (Length: 437)

Name: NF20679_low_2
Description: NF20679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20679_low_2
NF20679_low_2
[»] chr2 (2 HSPs)
chr2 (1-324)||(26665183-26665506)
chr2 (376-417)||(26665558-26665599)
[»] chr8 (3 HSPs)
chr8 (1-234)||(10641382-10641614)
chr8 (1-234)||(32713993-32714225)
chr8 (241-302)||(37394539-37394602)
[»] chr1 (5 HSPs)
chr1 (1-234)||(22905451-22905685)
chr1 (1-213)||(21532402-21532614)
chr1 (228-324)||(22906374-22906470)
chr1 (228-324)||(21531619-21531715)
chr1 (145-220)||(6315995-6316070)
[»] scaffold0697 (2 HSPs)
scaffold0697 (1-213)||(3360-3572)
scaffold0697 (228-324)||(2574-2670)
[»] chr5 (1 HSPs)
chr5 (11-71)||(33320435-33320495)
[»] chr4 (1 HSPs)
chr4 (241-300)||(1279666-1279727)
[»] chr6 (1 HSPs)
chr6 (376-417)||(21505196-21505237)


Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 26665183 - 26665506
Alignment:
Q  1 ttatttactctattggatatgttactagtgcaacttttgatttatttttgaaaaagtgattttgctggtctcgtattggtttcagtttatgcataactag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26665183 ttatttactctattggatatgttactagtgcaacttttgatttatttttgaaaaagtgattttgctagtctcgtattggtttcagtttatgcataactag 26665282  T
Q  101 tttttagtgtcnnnnnnnagtttgttcttgtggattttgcaatcttctttaatagtgaagatggggacagaactgattctaagtttatgtgtaacatcag 200  Q
    |||||||||||       |||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  26665283 tttttagtgtctttttttagtttgttcttgtggactttgaaatcttctttaatagtgaagatggggacaaaactgattataagtttatgtgtaacatcag 26665382  T
Q  201 tggtgtctggtgttatttcaacaggttggggctgatttcaaatcattgatgatataaagagcagtgtaggtttagccttgtttttgctgtcggatctgca 300  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26665383 tggtgtctggtgtgatttcaacaggtaggggctgatttcaaatcattgatgatataaagagcagtgtaggtttagccttgtttttgctgtcggatctgca 26665482  T
Q  301 atttaatgcagtttcattccatac 324  Q
    ||||| ||||||| ||||||||||    
T  26665483 atttagtgcagttccattccatac 26665506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 417
Target Start/End: Original strand, 26665558 - 26665599
Alignment:
Q  376 gaggttggtatgtccaattttcagtgcagttttatgagttgt 417  Q
    |||| |||||||| |||||||||||||||||||||| |||||    
T  26665558 gaggctggtatgttcaattttcagtgcagttttatgcgttgt 26665599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 10641382 - 10641614
Alignment:
Q  1 ttatttactctattggatatgttactagtgcaacttttgatttatttttgaaaaagtgattttgctggtctcgtattggtttcagtttatgcataactag 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10641382 ttatttactctattggatatgttacaagtgcaacttttgatttatttttgaaaaagtgattttgttggtctcgtattggtttcagtttatgcataactag 10641481  T
Q  101 tttttagtgtcnnnnnnnagtttgttcttgtggattttgcaatcttctttaatagtgaagatggggacagaactgattctaagtttatgtgtaacatcag 200  Q
    |||| ||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10641482 tttt-agtgtctttttttagtttgttcttgtggattttgcaatcttctttaatagtgaagatggggacagaactgattctaagtttatgtgtaacatcag 10641580  T
Q  201 tggtgtctggtgttatttcaacaggttggggctg 234  Q
    ||||| |||||||||||||||||||||| |||||    
T  10641581 tggtggctggtgttatttcaacaggttgtggctg 10641614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 32714225 - 32713993
Alignment:
Q  1 ttatttactctattggatatgttactagtgcaacttttgatttatttttgaaaaagtgattttgctggtctcgtattggtttcagtttatgcataactag 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  32714225 ttatttactctattggatatgttacaagtgcaacttttgatttatttttgaaaaagtgattttgttggtctcgtattggtttcagtttatgcataactag 32714126  T
Q  101 tttttagtgtcnnnnnnnagtttgttcttgtggattttgcaatcttctttaatagtgaagatggggacagaactgattctaagtttatgtgtaacatcag 200  Q
     ||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||| |    
T  32714125 -ttttagtgtctttttttagtttgttcttgtggattttgcaatcttctttaatagtgaagatggggacatagttgattctaagtttatgtgtaacatccg 32714027  T
Q  201 tggtgtctggtgttatttcaacaggttggggctg 234  Q
    ||||| |||||||||||||||||||||| |||||    
T  32714026 tggtggctggtgttatttcaacaggttgtggctg 32713993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 241 - 302
Target Start/End: Complemental strand, 37394602 - 37394539
Alignment:
Q  241 aatcattgatgatataaagagca--gtgtaggtttagccttgtttttgctgtcggatctgcaat 302  Q
    |||||||||||||||||||||||  |||||||||  |||||||||||||||| |||||||||||    
T  37394602 aatcattgatgatataaagagcaaagtgtaggttctgccttgtttttgctgttggatctgcaat 37394539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 178; Significance: 7e-96; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 22905451 - 22905685
Alignment:
Q  1 ttatttactctattggatatgttactagtgcaacttttgatttattttt-gaaaaagtgattttgctggtctcgtattggtttcagtttatgcataacta 99  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  22905451 ttatttactatattggatatgttactagtgcaacttttgatttattttttgaaaaagtgattttgctggtctcgtattagtttcagtttatgcataacta 22905550  T
Q  100 gtttttagtgtcnnnnnnnagtttgttcttgtggattttgcaatcttctttaatagtgaagatggggacagaactgattctaagtttatgtgtaacatca 199  Q
    ||||||||||||       ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  22905551 gtttttagtgtctttttttagtttgttcttatggattttgcaatcttctttaatagtgaagatggggagagaactgattctatgtttatgtgtaacatca 22905650  T
Q  200 gtggtgtctggtgttatttcaacaggttggggctg 234  Q
    |||||| |||||||||||||||||||||| |||||    
T  22905651 gtggtggctggtgttatttcaacaggttgtggctg 22905685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 21532614 - 21532402
Alignment:
Q  1 ttatttactctattggatatgttactagtgcaacttttgatttatttttgaaaaagtgattttgctggtctcgtattggtttcagtttatgcataactag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  21532614 ttatttactctattggatatgttactagtgcaacttttgatttatttttgaaaaagtgattttgctggtctcgtattggtttcagtttatgtataactag 21532515  T
Q  101 tttttagtgtcnnnnnnnagtttgttcttgtggattttgcaatcttctttaatagtgaagatggggacagaactgattctaagtttatgtgtaacatcag 200  Q
    |||||||||||       ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  21532514 tttttagtgtctttttttagtttattcttgtggattttgcaatcttctttaatagtgaagatggggacagaactgattctaagtgtatgtttaacatcag 21532415  T
Q  201 tggtgtctggtgt 213  Q
    ||||| |||||||    
T  21532414 tggtggctggtgt 21532402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 228 - 324
Target Start/End: Original strand, 22906374 - 22906470
Alignment:
Q  228 ggggctgatttcaaatcattgatgatataaagagcagtgtaggtttagccttgtttttgctgtcggatctgcaatttaatgcagtttcattccatac 324  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||| ||||||||||    
T  22906374 ggggttgatttcaaatcattgatgatataaagagcagtgtaggttcagccttgtttttgttgtcggatctgcaatttagtgcagttccattccatac 22906470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 228 - 324
Target Start/End: Complemental strand, 21531715 - 21531619
Alignment:
Q  228 ggggctgatttcaaatcattgatgatataaagagcagtgtaggtttagccttgtttttgctgtcggatctgcaatttaatgcagtttcattccatac 324  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| || |||| ||||||||||    
T  21531715 ggggctaatttcaaatcattgatgatataaagagcaatgtaggtttagccttgtttttgatgtcggatctgcaatttagtgtagttccattccatac 21531619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 6316070 - 6315995
Alignment:
Q  145 ttctttaatagtgaagatggggacagaactgattctaagtttatgtgtaacatcagtggtgtctggtgttatttca 220  Q
    ||||||| ||||||| || ||||||||||||||||| ||||| ||| ||||||| || ||| ||| ||||||||||    
T  6316070 ttctttagtagtgaaaatagggacagaactgattctgagtttctgtttaacatctgtcgtggctgctgttatttca 6315995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0697 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 3572 - 3360
Alignment:
Q  1 ttatttactctattggatatgttactagtgcaacttttgatttatttttgaaaaagtgattttgctggtctcgtattggtttcagtttatgcataactag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3572 ttatttactctattggatatgttactagtgcaacttttgatttatttttgaaaaagtgattttgctggtctcgtattggtttcagtttatgtataactag 3473  T
Q  101 tttttagtgtcnnnnnnnagtttgttcttgtggattttgcaatcttctttaatagtgaagatggggacagaactgattctaagtttatgtgtaacatcag 200  Q
    |||||||||||       ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  3472 tttttagtgtctttttttagtttattcttgtggattttgcaatcttctttaatagtgaagatggggacagaactgattctaagtgtatgtttaacatcag 3373  T
Q  201 tggtgtctggtgt 213  Q
    ||||| |||||||    
T  3372 tggtggctggtgt 3360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0697; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 228 - 324
Target Start/End: Complemental strand, 2670 - 2574
Alignment:
Q  228 ggggctgatttcaaatcattgatgatataaagagcagtgtaggtttagccttgtttttgctgtcggatctgcaatttaatgcagtttcattccatac 324  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| || |||| ||||||||||    
T  2670 ggggctaatttcaaatcattgatgatataaagagcaatgtaggtttagccttgtttttgatgtcggatctgcaatttagtgtagttccattccatac 2574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 33320495 - 33320435
Alignment:
Q  11 tattggatatgttactagtgcaacttttgatttatttttgaaaaagtgattttgctggtct 71  Q
    |||||||| ||||||| ||||||||||||||||||||||||| | ||||||||| ||||||    
T  33320495 tattggatgtgttactggtgcaacttttgatttatttttgaagaggtgattttggtggtct 33320435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 1279727 - 1279666
Alignment:
Q  241 aatcattgatgatataaagagca--gtgtaggtttagccttgtttttgctgtcggatctgca 300  Q
    |||||||||||||||||||||||  |||||||||  |||||||||||||||| |||||||||    
T  1279727 aatcattgatgatataaagagcaaagtgtaggttctgccttgtttttgctgttggatctgca 1279666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 417
Target Start/End: Original strand, 21505196 - 21505237
Alignment:
Q  376 gaggttggtatgtccaattttcagtgcagttttatgagttgt 417  Q
    |||| |||||||||||||||||||||||| |||||| |||||    
T  21505196 gaggctggtatgtccaattttcagtgcaggtttatgcgttgt 21505237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University