View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20679_low_4 (Length: 359)
Name: NF20679_low_4
Description: NF20679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20679_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 20 - 330
Target Start/End: Complemental strand, 330357 - 330047
Alignment:
| Q |
20 |
ttaagcccgtgagcccaaaccaaaaactagttcattaggtaggagagcctcgtggcttaagtgctcttaggttgcaatcaaggtcacactaacttcatgt |
119 |
Q |
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| T |
330357 |
ttaagcccgtgagcccaaatcaaaaactagctcattaggtaggagagcctcgtggcttaagtgctcttaggttgcaatcaaggccacactaacttcatgt |
330258 |
T |
|
| Q |
120 |
gttttaaatacttaagatttgaaacaaatactaaacaagcaaacaaaatccaatacttctgattctcatcaaaagaaatgtgtttatagatgcatacagt |
219 |
Q |
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| T |
330257 |
gttttaaatacttaagatttgaaacaaatactaaacaagcaaacaaaatccaatacttatgattctcatcaaaagaaatgtgtttatagatgcatacagt |
330158 |
T |
|
| Q |
220 |
tacaaatagaacaatttctcctatcaaattgaaattttgcacattccattgttggtaattcttaatattttatgtaaaatagcaaaatacagagacttgc |
319 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
330157 |
tacaaatagaacaatttctcccatcaaattgaaattttgcacattccattactggtaattcttaatattttatgtaaaatagtaaaatacagagacttgc |
330058 |
T |
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| Q |
320 |
aatctattggt |
330 |
Q |
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||||||||||| |
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| T |
330057 |
aatctattggt |
330047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 37223635 - 37223591
Alignment:
| Q |
37 |
aaccaaaaactagttcattaggtaggagagcctcgtggcttaagt |
81 |
Q |
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|||||||||||||| |||||||| ||||||||| |||||||||| |
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| T |
37223635 |
aaccaaaaactagtccattaggtgggagagcctaatggcttaagt |
37223591 |
T |
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