View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2067_high_1 (Length: 605)

Name: NF2067_high_1
Description: NF2067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2067_high_1
NF2067_high_1
[»] chr1 (7 HSPs)
chr1 (164-386)||(47457636-47457858)
chr1 (380-562)||(47457418-47457600)
chr1 (91-166)||(36384351-36384427)
chr1 (108-167)||(43824218-43824279)
chr1 (108-162)||(19563384-19563440)
chr1 (108-165)||(47459163-47459222)
chr1 (139-167)||(47458982-47459010)
[»] chr2 (5 HSPs)
chr2 (12-166)||(25628896-25629044)
chr2 (87-166)||(39822923-39823005)
chr2 (91-166)||(5737219-5737296)
chr2 (87-166)||(13466859-13466943)
chr2 (91-138)||(18058825-18058873)
[»] chr8 (5 HSPs)
chr8 (75-166)||(9305248-9305341)
chr8 (92-165)||(30233835-30233910)
chr8 (107-165)||(29525917-29525977)
chr8 (91-166)||(35163012-35163090)
chr8 (115-162)||(36675669-36675718)
[»] chr5 (5 HSPs)
chr5 (91-166)||(43146378-43146455)
chr5 (91-166)||(38089009-38089086)
chr5 (91-166)||(29668548-29668626)
chr5 (108-166)||(20256922-20256981)
chr5 (108-166)||(2134801-2134861)
[»] chr7 (2 HSPs)
chr7 (108-168)||(48065050-48065112)
chr7 (108-166)||(24879130-24879190)
[»] chr3 (5 HSPs)
chr3 (91-167)||(49323209-49323287)
chr3 (108-166)||(35637268-35637328)
chr3 (91-167)||(2663248-2663326)
chr3 (75-162)||(3984461-3984550)
chr3 (136-166)||(28212625-28212655)
[»] chr4 (2 HSPs)
chr4 (98-166)||(50470027-50470098)
chr4 (92-165)||(31799309-31799385)


Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 164 - 386
Target Start/End: Complemental strand, 47457858 - 47457636
Alignment:
Q  164 ttgatctttcgtgtgacaccatccaaacaagcttcaattctccttttaccatcattcaagcttctaaccaccaccatggaagcaagctaaacaaagacct 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47457858 ttgatctttcgtgtgacaccatccaaacaagcttcaattctccttttaccatcattcaagcttctaaccaccaccatggaagcaagctaaacaaagacct 47457759  T
Q  264 tcacaccaccttccacaatcatatcgaatcaatccaccacaacccgccaatctagtcgtttgcttcaaagcaccatcggtattaaggcaaaaatcacagt 363  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47457758 tcacaccaccttccacaatcatctcgaatcaatccaccacaacccgccaatctagtcgtttgcttcaaagcaccatcggtattaaggcaaaaatcacagt 47457659  T
Q  364 ccatggaaatcgcaaattattat 386  Q
    ||||||||||||||||| |||||    
T  47457658 ccatggaaatcgcaaatgattat 47457636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 380 - 562
Target Start/End: Complemental strand, 47457600 - 47457418
Alignment:
Q  380 ttattattcaaaatcacttattgacactaaacttagcatcactgccaattctacctttattcacttggtcacaaagaaaacagaattgactctaattgcg 479  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  47457600 ttattattcaaaatcacttattgacactaaacttagcatcactgccaattctacctttattcacttggtcgcaaagaaaacagaattgactctaattgcg 47457501  T
Q  480 tttactcctaccatatgaaactagattctttgtcaagccacataatgcatgacaagcaacataagagactactatgtgctcag 562  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47457500 tttactcctaccatatgaaactagattctttgtcaagccacataatgcatgacaagcaacataagagactactatgtgctcag 47457418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 36384351 - 36384427
Alignment:
Q  91 cttaatgaaaattacactttttaaaagttaataacatgtgtcatattt-attggttgggtgtaagaatgatgtgttg 166  Q
    |||||| ||||| ||||||||| |||||||||||||| ||| || ||| ||||||||||||||||||||||||||||    
T  36384351 cttaattaaaatcacacttttttaaagttaataacatatgttattttttattggttgggtgtaagaatgatgtgttg 36384427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 108 - 167
Target Start/End: Complemental strand, 43824279 - 43824218
Alignment:
Q  108 tttttaaaagttaataacatgtgtcatattt--attggttgggtgtaagaatgatgtgttga 167  Q
    ||||| ||||||||||||||||||||| |||  |||||||||||||||||||||||||||||    
T  43824279 ttttttaaagttaataacatgtgtcatttttttattggttgggtgtaagaatgatgtgttga 43824218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 108 - 162
Target Start/End: Complemental strand, 19563440 - 19563384
Alignment:
Q  108 tttttaaaagttaataacatgtgtcatattt--attggttgggtgtaagaatgatgt 162  Q
    ||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||    
T  19563440 tttttaaaagttaataatatgtgtcatatttttattggttgggtgtaagaatgatgt 19563384  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 47459163 - 47459222
Alignment:
Q  108 tttttaaaagttaataacatgtgtca--tatttattggttgggtgtaagaatgatgtgtt 165  Q
    ||||| ||||||||||||||||||||  | |||||||||||| ||||||||| |||||||    
T  47459163 ttttttaaagttaataacatgtgtcatttttttattggttggatgtaagaataatgtgtt 47459222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 139 - 167
Target Start/End: Complemental strand, 47459010 - 47458982
Alignment:
Q  139 attggttgggtgtaagaatgatgtgttga 167  Q
    |||||||||||||||||||||||||||||    
T  47459010 attggttgggtgtaagaatgatgtgttga 47458982  T

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Target: chr2 (Bit Score: 56; Significance: 7e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 12 - 166
Target Start/End: Complemental strand, 25629044 - 25628896
Alignment:
Q  12 atgaaaccattgttacagagagaaaccacgacaaaagagagaaagggacagttaaggctcccgtttatgtttatgttttcttaatgaaaattacactttt 111  Q
    ||||||||||||||||| |||||||||||||||||||||||  |||| || ||||||||||       |||| ||||| |||||| |||||| ||| |||    
T  25629044 atgaaaccattgttacatagagaaaccacgacaaaagagag--aggggcatttaaggctcc------ggtttctgtttccttaattaaaatttcaccttt 25628953  T
Q  112 taaaagttaataacatgtgtcata--tttattggttgggtgtaagaatgatgtgttg 166  Q
    | ||||||||||| |||| |||||  |||||||||||||||||| ||| ||||||||    
T  25628952 ttaaagttaataatatgtatcatatttttattggttgggtgtaaaaataatgtgttg 25628896  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 39822923 - 39823005
Alignment:
Q  87 ttttcttaatgaaaattacacttttta-aaagttaataacatgtgtcatattt--attggttgggtgtaagaatgatgtgttg 166  Q
    |||||||||| ||||| |||||||||  ||| |||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  39822923 ttttcttaattaaaatcacactttttttaaatttaataacatgtgtcatatttttattggttgggtgtaagaatgatgtgttg 39823005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 5737296 - 5737219
Alignment:
Q  91 cttaatgaaaattacactttttaaaagttaataacatgtgtca--tatttattggttgggtgtaagaatgatgtgttg 166  Q
    |||||||||||| || |||||| |||||||||||||  |||||  | |||||| ||||||||||||||||||||||||    
T  5737296 cttaatgaaaatcactcttttttaaagttaataacagatgtcaattttttatttgttgggtgtaagaatgatgtgttg 5737219  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 13466859 - 13466943
Alignment:
Q  87 ttttcttaatgaaaattacactt---tttaaaagttaataacatgtgtcata--tttattggttgggtgtaagaatgatgtgttg 166  Q
    |||||||||| ||||| ||||||   ||||||||||||||| || |||||||  ||||||||||  |||||||||| ||||||||    
T  13466859 ttttcttaattaaaatcacacttatttttaaaagttaataatatatgtcatatttttattggtttagtgtaagaattatgtgttg 13466943  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 138
Target Start/End: Complemental strand, 18058873 - 18058825
Alignment:
Q  91 cttaatgaaaattacacttt-ttaaaagttaataacatgtgtcatattt 138  Q
    |||||| ||||| ||||||| || |||||||||||||||||||||||||    
T  18058873 cttaattaaaatcacactttatttaaagttaataacatgtgtcatattt 18058825  T

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Target: chr8 (Bit Score: 51; Significance: 6e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 75 - 166
Target Start/End: Original strand, 9305248 - 9305341
Alignment:
Q  75 tttatgtttatgttttcttaatgaaaattacactttttaaaagttaataacatgtgtcata--tttattggttgggtgtaagaatgatgtgttg 166  Q
    ||||||||| | ||| |||||| ||||| ||||||||| ||||||||||||||||||||||  ||||||||||| |||||||||| ||||||||    
T  9305248 tttatgtttttatttccttaattaaaatcacacttttttaaagttaataacatgtgtcatatttttattggttgagtgtaagaataatgtgttg 9305341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 92 - 165
Target Start/End: Original strand, 30233835 - 30233910
Alignment:
Q  92 ttaatgaaaattacacttttta-aaagttaataacatgtgtcatattt-attggttgggtgtaagaatgatgtgtt 165  Q
    ||||| ||||| |||||||||  ||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  30233835 ttaattaaaatcacactttttttaaagttaataacatgtgtcattttttattggttgggtgtaagaatgatgtgtt 30233910  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 107 - 165
Target Start/End: Original strand, 29525917 - 29525977
Alignment:
Q  107 ctttttaaaagttaataacatgtgtcata--tttattggttgggtgtaagaatgatgtgtt 165  Q
    |||||| ||||||||||||||||||||||  |||||||||||||||||||||| |||||||    
T  29525917 cttttttaaagttaataacatgtgtcatatttttattggttgggtgtaagaataatgtgtt 29525977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 35163090 - 35163012
Alignment:
Q  91 cttaatgaaaattacacttttta-aaagttaataacatgtgtcata--tttattggttgggtgtaagaatgatgtgttg 166  Q
    |||||| ||||| |||||||||  ||||||||||||||||||||||  ||||||||| |||||||||||| ||||||||    
T  35163090 cttaattaaaatcacactttttttaaagttaataacatgtgtcatatttttattggtcgggtgtaagaataatgtgttg 35163012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 115 - 162
Target Start/End: Complemental strand, 36675718 - 36675669
Alignment:
Q  115 aagttaataacatgtgtcatattt--attggttgggtgtaagaatgatgt 162  Q
    |||||||||| |||||||||||||  ||||||||||||||||||| ||||    
T  36675718 aagttaataatatgtgtcatatttttattggttgggtgtaagaataatgt 36675669  T

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Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 43146378 - 43146455
Alignment:
Q  91 cttaatgaaaattacactttttaaaagttaataacatgtgtcata--tttattggttgggtgtaagaatgatgtgttg 166  Q
    |||||| ||||| ||||||||| ||||||||||||||||||||||  |||||||||||||||||||||| ||||||||    
T  43146378 cttaattaaaatcacacttttttaaagttaataacatgtgtcatatttttattggttgggtgtaagaataatgtgttg 43146455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 38089009 - 38089086
Alignment:
Q  91 cttaatgaaaattacactttttaaaagttaataacatgtgtcatattt--attggttgggtgtaagaatgatgtgttg 166  Q
    |||||| ||||| ||| |||||  || |||||||||||||||||||||  ||||||||||||||||||| ||||||||    
T  38089009 cttaattaaaatcacattttttttaaattaataacatgtgtcatatttttattggttgggtgtaagaataatgtgttg 38089086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 29668548 - 29668626
Alignment:
Q  91 cttaatgaaaattacacttttta-aaagttaataacatgtgtcata--tttattggttgggtgtaagaatgatgtgttg 166  Q
    |||||| ||||| |||||||||  |||||||| |||||||||||||  |||||||||||| ||||||||| ||||||||    
T  29668548 cttaattaaaatcacactttttttaaagttaacaacatgtgtcatatttttattggttggatgtaagaataatgtgttg 29668626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 20256981 - 20256922
Alignment:
Q  108 tttttaaaagttaataacatgtgtcatatttat-tggttgggtgtaagaatgatgtgttg 166  Q
    ||||| ||||||||||||||||||||||||| | | ||||||||||||||  ||||||||    
T  20256981 ttttttaaagttaataacatgtgtcatatttttattgttgggtgtaagaaaaatgtgttg 20256922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 166
Target Start/End: Original strand, 2134801 - 2134861
Alignment:
Q  108 tttttaaaagttaataacatgtgtcatattt--attggttgggtgtaagaatgatgtgttg 166  Q
    ||||| |||||||| |||||||||||| |||  ||||||| ||||||| ||||||||||||    
T  2134801 ttttttaaagttaagaacatgtgtcatttttttattggtttggtgtaacaatgatgtgttg 2134861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 48065050 - 48065112
Alignment:
Q  108 tttttaaaagttaataacatgtgtcatattt--attggttgggtgtaagaatgatgtgttgat 168  Q
    ||||| |||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||    
T  48065050 ttttttaaagttaataacatgtgtcatatttttattggttgggtgtaagaataatgtgttgat 48065112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 166
Target Start/End: Original strand, 24879130 - 24879190
Alignment:
Q  108 tttttaaaagttaataacatgtgtcata--tttattggttgggtgtaagaatgatgtgttg 166  Q
    ||||| |||||||||||||| |||||||  ||||||| | |||||||||||| ||||||||    
T  24879130 ttttttaaagttaataacatatgtcatatttttattgatcgggtgtaagaataatgtgttg 24879190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 91 - 167
Target Start/End: Original strand, 49323209 - 49323287
Alignment:
Q  91 cttaatgaaaattacactttttaaaagttaataacatgtgtca--tatttattggttgggtgtaagaatgatgtgttga 167  Q
    |||||| ||||| ||||||||| |||||||| |||||||||||  | |||||||||| |||||||||||||||||||||    
T  49323209 cttaattaaaatcacacttttttaaagttaacaacatgtgtcatctttttattggttaggtgtaagaatgatgtgttga 49323287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 108 - 166
Target Start/End: Original strand, 35637268 - 35637328
Alignment:
Q  108 tttttaaaagttaataacatgtgtcata--tttattggttgggtgtaagaatgatgtgttg 166  Q
    ||||| ||||||||||||||||||||||  |||||||||||||||||||||| ||||||||    
T  35637268 ttttttaaagttaataacatgtgtcatatttttattggttgggtgtaagaataatgtgttg 35637328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 91 - 167
Target Start/End: Complemental strand, 2663326 - 2663248
Alignment:
Q  91 cttaatgaaaattacacttttta-aaagttaataacatgtgtcatattt-attggttgggtgtaagaatgatgtgttga 167  Q
    |||||| ||||| |||||||||  |||||||||||||| |||||| ||| ||||||| |||||||||||||||||||||    
T  2663326 cttaattaaaatcacactttttttaaagttaataacatatgtcattttttattggtttggtgtaagaatgatgtgttga 2663248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 162
Target Start/End: Complemental strand, 3984550 - 3984461
Alignment:
Q  75 tttatgtttatgttttcttaatgaaaattacactttttaaaagttaataacatgtgtca--tatttattggttgggtgtaagaatgatgt 162  Q
    ||||||||| | ||| |||| | ||||| ||||||||| ||||||||||||||||||||  | ||||||||| | || ||||||||||||    
T  3984550 tttatgtttctatttccttagttaaaatcacacttttttaaagttaataacatgtgtcatttttttattggtcgagtttaagaatgatgt 3984461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 136 - 166
Target Start/End: Complemental strand, 28212655 - 28212625
Alignment:
Q  136 tttattggttgggtgtaagaatgatgtgttg 166  Q
    |||||||||||||||||||||||||||||||    
T  28212655 tttattggttgggtgtaagaatgatgtgttg 28212625  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 50470098 - 50470027
Alignment:
Q  98 aaaattacacttttta-aaagttaataacatgtgtcata--tttattggttgggtgtaagaatgatgtgttg 166  Q
    |||||||||||||||  ||||||||||||||||||||||  |||||||||||| ||||||||| ||||||||    
T  50470098 aaaattacactttttttaaagttaataacatgtgtcatatttttattggttggatgtaagaataatgtgttg 50470027  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 165
Target Start/End: Original strand, 31799309 - 31799385
Alignment:
Q  92 ttaatgaaaattacacttttta-aaagttaataacatgtgtca--tatttattggttgggtgtaagaatgatgtgtt 165  Q
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T  31799309 ttaattaaaatcacactttttttaaagttaataacatgtgtcatttttttattgattgagtataagaatgatgtgtt 31799385  T

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