View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2067_low_1 (Length: 846)
Name: NF2067_low_1
Description: NF2067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2067_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 729; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 729; E-Value: 0
Query Start/End: Original strand, 17 - 832
Target Start/End: Original strand, 41876176 - 41876994
Alignment:
| Q |
17 |
acctataagtggtttgttctcatttttattttaatccatcaaccaaatgttttaaaattttcataaattttagtatcctcttctcgattttccaacaaaa |
116 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
41876176 |
acctataagtggtttgttctcatttttatgttaatccatcaaccaaatgttttaaaattttcataaattttagtattctcttctcgattttccaacaaaa |
41876275 |
T |
|
| Q |
117 |
tgaaaattgtaggcggtggtatggcatcgggagtagcattagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagttga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
41876276 |
tgaaaattgtaggcggtggtatggcatcgggagtagcattagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagctga |
41876375 |
T |
|
| Q |
217 |
tgatgcagcgcaatctaaagcagctgggaggataataacactgcctgaggtcaataccatagcagacgggctccgagcatgtctcggaaattttacatgg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
41876376 |
tgatgcagcgcaatctaaagcagctgggaggataataacattgcctgaggtcaataccatagcagatgggctccgagcatgtctcggaaattttacatgg |
41876475 |
T |
|
| Q |
317 |
taaaataaaatattttgcaataaatttttgtggtcttacgattaacttgtcgaattttctatgacacaggcctgttgtacgagatcttgttgatgacata |
416 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41876476 |
taaaatcaaatattttgcaataaatttttgtggtcttacgattaacttgtcgaattttctatgacacaggcctgttgtacgagatcttgttgatgacata |
41876575 |
T |
|
| Q |
417 |
ataactgtggaagatagtgaaattgtgaaagccatgaaactatgttttgaaattctaaagattgttgttgaaccaagtggagcaatcggccttgctgctg |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41876576 |
ataactgtggaagatagtgaaattgtgaaagccatgaaactatgttttgaaattctaaagattgttgttgaaccaagtggagcaatcggccttgctgctg |
41876675 |
T |
|
| Q |
517 |
tcttatcaaaaacttttcagaaaaatgatgcttggaaggatagcaagcatattggaatagtaatttcaggtggcaatgttgatatggcagtgctttggaa |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41876676 |
tcttatcaaaaacttttcagaaaaatgatgcttggaaggatagcaagcatataggaatagtaatttcaggtggcaatgttgatatggcagtgctttggaa |
41876775 |
T |
|
| Q |
617 |
ttatttgaacaaatcaaaatgacttttcgttattattcaattactgatgtaaaagtttgtgtggat---tatctcaatgctactagcatttattaatatg |
713 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| | |
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| T |
41876776 |
ttatttgaacaaatcaaaatgacttttcgttattattcaattactgatgtaaaagtttgtgtggattaatatctcaatgctactagcatttactaattta |
41876875 |
T |
|
| Q |
714 |
aaataaaaagtatttgaattaatccaaaatttataaaacttgagtattttacatacaatttatttgaatttataaataacattttattgtaatttaaacg |
813 |
Q |
| |
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|||||||| ||||||||||||| | ||||||||| |||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||| |
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|
| T |
41876876 |
aaataaaatatatttgaattaattcgaaatttatacaacttgagtattttacataccatttatttgaatttacaaataatattttattgtaatttaaacg |
41876975 |
T |
|
| Q |
814 |
gtaccaaacggcacaggtt |
832 |
Q |
| |
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| ||||||||||||||||| |
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|
| T |
41876976 |
gcaccaaacggcacaggtt |
41876994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 142; Significance: 4e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 383 - 644
Target Start/End: Complemental strand, 40867503 - 40867242
Alignment:
| Q |
383 |
caggcctgttgtacgagatcttgttgatgacataataactgtggaagatagtgaaattgtgaaagccatgaaactatgttttgaaattctaaagattgtt |
482 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||| |||| |||| ||||||||| ||||||||| |
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| T |
40867503 |
caggcctgtcgtacgagatcttgttgacgacataataactgtggaagacagtgaaattgttaaagccatgcaactgtgttatgaaattcttaagattgtt |
40867404 |
T |
|
| Q |
483 |
gttgaaccaagtggagcaatcggccttgctgctgtcttatcaaaaacttttcagaaaaatgatgcttggaaggatagcaagcatattggaatagtaattt |
582 |
Q |
| |
|
|| ||||||||||||||||| |||||||| ||||| |||| || |||||||||||||| ||||||||| ||| |||||||||| ||||||||| | | |
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| T |
40867403 |
gtagaaccaagtggagcaattggccttgcagctgttctatccgaatcttttcagaaaaatcctgcttggaaagattgcaagcatataggaatagtagtgt |
40867304 |
T |
|
| Q |
583 |
caggtggcaatgttgatatggcagtgctttggaattatttgaacaaatcaaaatgacttttc |
644 |
Q |
| |
|
||||||| |||||||||||||| ||||||||| ||| | ||||||||| ||| ||||||||| |
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|
| T |
40867303 |
caggtggaaatgttgatatggccgtgctttgggattctctgaacaaatgaaattgacttttc |
40867242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 21 - 319
Target Start/End: Complemental strand, 40867886 - 40867588
Alignment:
| Q |
21 |
ataagtggtttgttctcatttttattttaatccatcaaccaaa-tgttttaaaattttcataaattttagtatcctcttctcgattttccaacaaaatga |
119 |
Q |
| |
|
|||||||||||||| | |||| || | || |||||| ||||| ||||| ||||||| ||| ||||| |||||| ||||| |||||||||||||| ||| |
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|
| T |
40867886 |
ataagtggtttgtttgctttttgatgtcaaaccatcatccaaaatgtttcaaaatttgcattgattttggtatccccttcttgattttccaacaaa-tga |
40867788 |
T |
|
| Q |
120 |
aaattgtaggcggtggtatggcatcgggagtagcattagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagttgatga |
219 |
Q |
| |
|
||| || ||| |||||| || ||| ||||||||||| ||||||||| | || |||||| | ||||| |||||||||||||| || ||||| | ||||| |
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| T |
40867787 |
aaactgcaggaggtggtttgatatcaggagtagcattggctgccaagtctatcaacccggccattcgtattttggctgctgaacctaaaggggccgatga |
40867688 |
T |
|
| Q |
220 |
tgcagcgcaatctaaagcagctgggaggataataacactgcctgaggtcaataccatagcagacgggctccgagcatgtctcggaaattttacatggtaa |
319 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||| |||| ||| |||||| ||||| |||||||| ||||||| ||| ||| |||| ||||||||| |
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| T |
40867687 |
cgcagcacaatctaaagcagctggaaggataataacattgcccgagaccaatactatagctgacgggctacgagcatttcttggagatttcacatggtaa |
40867588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 5e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 21 - 254
Target Start/End: Complemental strand, 24817669 - 24817434
Alignment:
| Q |
21 |
ataagtggtttgttctca--tttttattttaatccatcaaccaaatgttttaaaattttcataaattttagtatcctcttctcgattttccaacaaaatg |
118 |
Q |
| |
|
||||||||||||||||| |||||| | ||||||||| | |||||||| | ||||| |||| | |||||||||||||| |||||||| |||||||| |
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|
| T |
24817669 |
ataagtggtttgttctctcttttttacgtcaatccatcatcaaaatgtttcacaatttgcatataatttagtatcctcttatcgattttgttacaaaatg |
24817570 |
T |
|
| Q |
119 |
aaaattgtaggcggtggtatggcatcgggagtagcattagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagttgatg |
218 |
Q |
| |
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| | ||| |||||| |||||| | | ||| ||||| ||||||||||||| ||||| ||| ||||||| ||||||||||||||||| ||||||| ||||| |
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| T |
24817569 |
atacttgcaggcggcggtatgatagcaggaatagcaatagctgccaaggcgattaatccggctattcgtattttggctgctgagcctaaaggagctgatg |
24817470 |
T |
|
| Q |
219 |
atgcagcgcaatctaaagcagctgggaggataataa |
254 |
Q |
| |
|
||||||| ||||| |||||||| || |||||||||| |
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|
| T |
24817469 |
atgcagctcaatccaaagcagccggaaggataataa |
24817434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 21 - 254
Target Start/End: Complemental strand, 24800593 - 24800358
Alignment:
| Q |
21 |
ataagtggtttgttctca--tttttattttaatccatcaaccaaatgttttaaaattttcataaattttagtatcctcttctcgattttccaacaaaatg |
118 |
Q |
| |
|
||||||||||||||||| |||||| | ||||||||| | |||||||| | ||||| |||| | |||||||||||||| |||||||| |||||||| |
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|
| T |
24800593 |
ataagtggtttgttctctcttttttacgtcaatccatcatcaaaatgtttcacaatttgcatataatttagtatcctcttatcgattttgttacaaaatg |
24800494 |
T |
|
| Q |
119 |
aaaattgtaggcggtggtatggcatcgggagtagcattagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagttgatg |
218 |
Q |
| |
|
| | ||| ||| || |||||| | | ||| ||||| ||||||||||||| ||||| ||| ||||||| ||||||||||||||||| ||||||| ||||| |
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|
| T |
24800493 |
atacttgcaggtggcggtatgatagcaggaatagcaatagctgccaaggcgattaatccggctattcgtattttggctgctgagcctaaaggagctgatg |
24800394 |
T |
|
| Q |
219 |
atgcagcgcaatctaaagcagctgggaggataataa |
254 |
Q |
| |
|
||||||| ||||| |||||||| || |||||||||| |
|
|
| T |
24800393 |
atgcagctcaatccaaagcagccggaaggataataa |
24800358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 355 - 542
Target Start/End: Complemental strand, 9735855 - 9735668
Alignment:
| Q |
355 |
cgattaacttgtcgaattttctatgacacaggcctgttgtacgagatcttgttgatgacataataactgtggaagatagtgaaattgtgaaagccatgaa |
454 |
Q |
| |
|
||||||| ||||||| |||||| |||||||||||| |||||| |||||||||||| || ||||| || |||||||| |||||| | ||||| ||||| |
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|
| T |
9735855 |
cgattaatttgtcgagttttctgtgacacaggcctattgtacaagatcttgttgaagatataatcacagtggaagactttgaaatcatcaaagcaatgaa |
9735756 |
T |
|
| Q |
455 |
actatgttttgaaattctaaagattgttgttgaaccaagtggagcaatcggccttgctgctgtcttatcaaaaacttttcagaaaaat |
542 |
Q |
| |
|
||| |||||| || || | ||||||||| | ||| || ||||||| ||||||| || ||| |||| ||||||||||||||||| |
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|
| T |
9735755 |
actgtgttttaaactttttaagattgttttagaatcatgtggagctgctggccttgttgttgtgctatctgaaacttttcagaaaaat |
9735668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 146 - 304
Target Start/End: Complemental strand, 9736090 - 9735930
Alignment:
| Q |
146 |
ggagtagcattagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagttgatgat--gcagcgcaatctaaagcagctgg |
243 |
Q |
| |
|
||||||||| |||||||||| || |||||| || ||||| | ||||||| |||||||| ||||||| ||||||| ||| |||||||||| || | | |
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|
| T |
9736090 |
ggagtagcaatagctgccaaagctattaactcggctatttgtattttggttgctgagcataaaggagctgatgatatgcatcgcaatctaagacaacaag |
9735991 |
T |
|
| Q |
244 |
gaggataataacactgcctgaggtcaataccatagcagacgggctccgagcatgtctcgga |
304 |
Q |
| |
|
||||||||||| | |||||||| | |||| ||||||||| |||| ||||||| ||||||| |
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|
| T |
9735990 |
gaggataataaaattgcctgagataaatattatagcagacaggcttcgagcatttctcgga |
9735930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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