View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2067_low_11 (Length: 246)
Name: NF2067_low_11
Description: NF2067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2067_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 15203722 - 15203962
Alignment:
| Q |
1 |
ttgaatgttgccacaatacaatggttcacaacataatcacaatgagctataatataatatattcaaattttaattctacctatatatgtagacttggatt |
100 |
Q |
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| T |
15203722 |
ttgaatgttgccacaatacaatggttcacaacataatcacaatgagctataatataatatattcaaattttaattctacctatatatgcagacttggatt |
15203821 |
T |
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| Q |
101 |
gtcaaggattatccagaagagctagtgataacaaccatttgttgctgttttgtggtaatcatatctaccattgtagctctcattgcagagggaaattcaa |
200 |
Q |
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| T |
15203822 |
gtcaaggattatccagaagagctagtgataacaaccatttgttgctgttttgtggtaatcatatctaccattgtagctctcattgcagagggaaattcaa |
15203921 |
T |
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| Q |
201 |
aagcttggagactcagacctgataaagagttgctatctgtg |
241 |
Q |
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| T |
15203922 |
aagcttggagactcagacctgataaagagttgctatctgtg |
15203962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 81 - 241
Target Start/End: Original strand, 15210577 - 15210737
Alignment:
| Q |
81 |
tatatatgtagacttggattgtcaaggattatccagaagagctagtgataacaaccatttgttgctgttttgtggtaatcatatctaccattgtagctct |
180 |
Q |
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| T |
15210577 |
tatatatacagacttggattgtcagggattatccagaagagctagtgataaacaccatttgttgctgttttgtggtaatcatatctaccattgtagctct |
15210676 |
T |
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| Q |
181 |
cattgcagagggaaattcaaaagcttggagactcagacctgataaagagttgctatctgtg |
241 |
Q |
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| T |
15210677 |
cattgcagagggaaattcaaatgcttggagactcagacctgataaagagttgctatctgtg |
15210737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 81 - 241
Target Start/End: Original strand, 15181897 - 15182057
Alignment:
| Q |
81 |
tatatatgtagacttggattgtcaaggattatccagaagagctagtgataacaaccatttgttgctgttttgtggtaatcatatctaccattgtagctct |
180 |
Q |
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||||||| ||||||||||| | | ||||||||| |||||||||||| |||||| |||||||||| | | |||||||| ||||| | ||||||||||| |
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| T |
15181897 |
tatatatacagacttggattataagggattatcctgaagagctagtggtaacaagcatttgttgcagcatggtggtaattctatctgcaattgtagctct |
15181996 |
T |
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| Q |
181 |
cattgcagagggaaattcaaaagcttggagactcagacctgataaagagttgctatctgtg |
241 |
Q |
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| T |
15181997 |
cattgcagagggaaattcaaaagtttggattctcagacctgatagggagttggtagctgtg |
15182057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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