View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2067_low_13 (Length: 230)
Name: NF2067_low_13
Description: NF2067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2067_low_13 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 14077522 - 14077751
Alignment:
| Q |
1 |
tgatgggtctggattattcatcttgtgataatattggacatcacatgttgagtgtgcttgaatcatgtaacctataattaaatgaatctatgatgggtta |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14077522 |
tgatgggtctggattattcatcttgtgataatataggacatcacatgttgagtgtgcttgaatcatgtaacttataattaaatgaatctatgatgggtta |
14077621 |
T |
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| Q |
101 |
aaccattcaacttttcatgaaaggatatgatttgatacgttatgactattcaactcttcatttaaaatttcacttgaataactttaaaaggtaaatatct |
200 |
Q |
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| T |
14077622 |
aaccattcaacttttcatgaaagggtatggtttgataccttatgactattcaactcttcatttaaaatttcccttgaataactttaaaaggtaaatatct |
14077721 |
T |
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| Q |
201 |
ttacaacttgaataaataaaaccttggtat |
230 |
Q |
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| T |
14077722 |
ttacaacttgaataaataaaaccttggtat |
14077751 |
T |
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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 31 - 152
Target Start/End: Complemental strand, 22382227 - 22382106
Alignment:
| Q |
31 |
atattggacatcacatgttgagtgtgcttgaatcatgtaacctataattaaatgaatctatgatgggttaaaccattcaacttttcatgaaaggatatga |
130 |
Q |
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| T |
22382227 |
atattagacatcacatggtaggtgtacttgaataatgtagcctatagttaaatgaatccatgatgggttgaaccattcaactctttatgaaagggtatag |
22382128 |
T |
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| Q |
131 |
tttgatacgttatgactattca |
152 |
Q |
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| T |
22382127 |
tttgataccttatgactattca |
22382106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 31 - 152
Target Start/End: Original strand, 42256892 - 42257013
Alignment:
| Q |
31 |
atattggacatcacatgttgagtgtgcttgaatcatgtaacctataattaaatgaatctatgatgggttaaaccattcaacttttcatgaaaggatatga |
130 |
Q |
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| T |
42256892 |
atattggacatcacacggtaggtgtacttgaataatgcagcctataattgaatgaatccatgatggatggaaccattcaactctttataaaagggtatgg |
42256991 |
T |
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| Q |
131 |
tttgatacgttatgactattca |
152 |
Q |
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|||||||| |||| |||||||| |
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| T |
42256992 |
tttgataccttataactattca |
42257013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 152
Target Start/End: Complemental strand, 40887583 - 40887496
Alignment:
| Q |
65 |
atgtaacctataattaaatgaatctatgatgggttaaaccattcaacttttcatgaaaggatatgatttgatacgttatgactattca |
152 |
Q |
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| T |
40887583 |
atgtagcctatagttgaatgaatccatgatggatggaaccattcaactcattgtgaaaggatatggtttgataccttatgactattca |
40887496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 152
Target Start/End: Complemental strand, 17481712 - 17481591
Alignment:
| Q |
31 |
atattggacatcacatgttgagtgtgcttgaatcatgtaacctataattaaatgaatctatgatgggttaaaccattcaacttttcatgaaaggatatga |
130 |
Q |
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||||| ||||||||||| | |||| ||||||| ||||| |||||| || |||||||| ||||||||| |||||||||||| || |||||||| ||| |
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| T |
17481712 |
atattagacatcacatggtaggtgtacttgaataatgtagcctatagttgaatgaatccatgatgggtggaaccattcaactctttatgaaagggtatcg |
17481613 |
T |
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| Q |
131 |
tttgatacgttatgactattca |
152 |
Q |
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|||||||| || |||||||||| |
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| T |
17481612 |
tttgataccttgtgactattca |
17481591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 138
Target Start/End: Complemental strand, 48228946 - 48228839
Alignment:
| Q |
30 |
aatattggacatcacatgttgagtgtgcttgaatcatgtaacctataattaaatgaatctatgatgggttaaaccattcaacttttcatgaaaggatatg |
129 |
Q |
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||||||| | |||||||| ||||||||||||||| ||| | | |||| |||||||||| ||||| || | ||||||||||||||| |||||||| ||| |
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| T |
48228946 |
aatattgaatatcacatgatgagtgtgcttgaataatgaagcatatagttaaatgaattcatgat-ggatgaaccattcaactttttatgaaaggttata |
48228848 |
T |
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| Q |
130 |
atttgatac |
138 |
Q |
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| T |
48228847 |
gtttgatac |
48228839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 25019937 - 25019885
Alignment:
| Q |
100 |
aaaccattcaacttttcatgaaaggatatgatttgatacgttatgactattca |
152 |
Q |
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||||||||||||| | |||||||| |||| |||||||| ||||||||||||| |
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| T |
25019937 |
aaaccattcaactctgtatgaaagggtatggtttgataccttatgactattca |
25019885 |
T |
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