View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2067_low_14 (Length: 227)
Name: NF2067_low_14
Description: NF2067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2067_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 4215635 - 4215803
Alignment:
| Q |
1 |
tttgttgttgcaattttgaatggttattgtgctgagggtgcaggaacaagaaatcaaccaaagaaagacgatgatatttacaaatctgaaaaaacgttcg |
100 |
Q |
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| T |
4215635 |
tttgttgttgcaattttgaatggttattgtgctgagggtgcagaaacaagtaatcaaccaaagaaagacgatgatatttacaaatctgaaaaaacgttcg |
4215734 |
T |
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| Q |
101 |
gttgtttgtttttgtataagatgtgtttgttctttcaaatagattgtcctgattactataagttatgtt |
169 |
Q |
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| T |
4215735 |
gttgtttgtttttgtataagatgtgtttgttctttcaaatagattgtcctgattactataagttatgtt |
4215803 |
T |
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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 4218180 - 4218217
Alignment:
| Q |
2 |
ttgttgttgcaattttgaatggttattgtgctgagggt |
39 |
Q |
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| T |
4218180 |
ttgttgttgcaattttgaatggctatagtgctgagggt |
4218217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 41804391 - 41804466
Alignment:
| Q |
17 |
tgaatggttattgtgctgagggtgcaggaacaagaaatcaaccaaagaaagacgatgatatttacaaatctgaaaa |
92 |
Q |
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| T |
41804391 |
tgaatggttataatgctgaggatggaggaagaggtaatccaccaaagaaagatgatggtatttacaaatctcaaaa |
41804466 |
T |
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