View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2067_low_15 (Length: 227)
Name: NF2067_low_15
Description: NF2067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2067_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 15203672 - 15203461
Alignment:
| Q |
1 |
aacctttatattagactacgaaatcaatattttttatttgtttacaaccataattaaatctgcatcggccacattttcttatggttctcttcacatgaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15203672 |
aacctttatattagactacgaaatcaatattttttatgtgtttacaaccataattaaatctgcatcggccacattttcttatggttctcttcacatgaca |
15203573 |
T |
|
| Q |
101 |
atcacaaatattaatagtttgtttacctggacaataaacaaaagagagagacaaaaacatgcaactgcaagaagaaaagcaccaagtatccaatctgatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15203572 |
atcacaaatattaatagtttgtttacctggacaataaacaaaagagagagacaaaaacatgcaactgcaagaagaaaagcaccaagtatccaatctgatt |
15203473 |
T |
|
| Q |
201 |
tccctaataggt |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
15203472 |
tccctaataggt |
15203461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 114 - 207
Target Start/End: Complemental strand, 15210515 - 15210422
Alignment:
| Q |
114 |
atagtttgtttacctggacaataaacaaaagagagagacaaaaacatgcaactgcaagaagaaaagcaccaagtatccaatctgatttccctaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15210515 |
atagtttgtttacctggacaataaacaaaagagaaagacaaaaactaccaactgcaacaagaaaagcaccaattatccaatctgatttccctaa |
15210422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 122 - 201
Target Start/End: Complemental strand, 15181704 - 15181625
Alignment:
| Q |
122 |
tttacctggacaataaacaaaagagagagacaaaaacatgcaactgcaagaagaaaagcaccaagtatccaatctgattt |
201 |
Q |
| |
|
||||||||||||||| |||||| ||| |||||||| | ||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15181704 |
tttacctggacaatatacaaaacagaaagacaaaagctagcagttgcaagaagaaaagcaccaagtatccagtctgattt |
15181625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 15191537 - 15191491
Alignment:
| Q |
166 |
tgcaagaagaaaagcaccaagtatccaatctgatttccctaataggt |
212 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
15191537 |
tgcaagaagaaaagcaccaattatccagtctgatttccctaataggt |
15191491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University