View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2067_low_4 (Length: 282)

Name: NF2067_low_4
Description: NF2067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2067_low_4
NF2067_low_4
[»] chr1 (5 HSPs)
chr1 (1-266)||(5185453-5185711)
chr1 (1-91)||(24065081-24065171)
chr1 (165-266)||(40490371-40490472)
chr1 (51-91)||(4614758-4614798)
chr1 (20-89)||(49702294-49702365)
[»] chr8 (3 HSPs)
chr8 (1-87)||(26932043-26932129)
chr8 (1-91)||(2246903-2246993)
chr8 (151-189)||(26932204-26932242)
[»] chr5 (3 HSPs)
chr5 (1-91)||(19237534-19237624)
chr5 (1-54)||(36044822-36044875)
chr5 (1-91)||(23622388-23622478)
[»] chr2 (4 HSPs)
chr2 (18-91)||(11553194-11553267)
chr2 (1-91)||(11818625-11818713)
chr2 (151-266)||(11553008-11553123)
chr2 (47-91)||(33650738-33650782)
[»] chr4 (3 HSPs)
chr4 (151-266)||(4462258-4462373)
chr4 (24-91)||(4462444-4462511)
chr4 (1-91)||(13685876-13685966)
[»] chr7 (3 HSPs)
chr7 (18-91)||(48769981-48770053)
chr7 (20-91)||(33611234-33611305)
chr7 (151-266)||(48769795-48769910)
[»] chr6 (2 HSPs)
chr6 (24-91)||(23509055-23509122)
chr6 (20-91)||(16416469-16416540)
[»] chr3 (2 HSPs)
chr3 (161-206)||(18342379-18342424)
chr3 (161-206)||(18356853-18356898)


Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 5185453 - 5185711
Alignment:
Q  1 tgcacccaaattcaaagtagtcgtctcgagtagtatggaaggcatcacaagtaagcttgaaatctgtttcaaaatcaacgttgtcaaattgtaaagcaga 100  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5185453 tgcatccaaattcagagtagtcgtctcgagtagtatggaaggcatcacaagtaagcttgaaatctgtttcaaaatcaacgttatcaaattgtaaagcaga 5185552  T
Q  101 atgtgatcccatgacttctccaacatcaacagaataatgaataatggcaggggtagctaacaaccttggccaaaacaaaagtaccttcaaaatctcgaac 200  Q
    ||||||||||||||||||| ||||||||| |||||||  |       || |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5185553 atgtgatcccatgacttcttcaacatcaatagaataacaa-------caagggtagctaacaaccttggccaaaacaaaaataccttcaaaatctcgaac 5185645  T
Q  201 ataaatactaatcccagttcggttgaagtgaaatgagaaagcaacatcaatattacacttgtacct 266  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  5185646 ataaatactaatcccagttcggttgaagcgaaatgagaaagcaatatcaatattacacttgtacct 5185711  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 24065171 - 24065081
Alignment:
Q  1 tgcacccaaattca-aagtagtcgtctcgagtagtatggaaggcatcacaagtaagcttgaaatctgtttcaaaatcaacgttgtcaaattg 91  Q
    |||||||||||||| |||| ||| |||||| ||| |||||||||||||||||||| ||||  ||| ||||||||||| ||||||||||||||    
T  24065171 tgcacccaaattcagaagt-gtcatctcgattagcatggaaggcatcacaagtaaacttggtatccgtttcaaaatcgacgttgtcaaattg 24065081  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 266
Target Start/End: Original strand, 40490371 - 40490472
Alignment:
Q  165 cttggccaaaacaaaagtaccttcaaaatctcgaacataaatactaatcccagttcggttgaagtgaaatgagaaagcaacatcaatattacacttgtac 264  Q
    |||||||| |||||||||||| |||||||||||| || |||||| ||| || || |||||||  ||| | ||||||||| | || ||||| || ||||||    
T  40490371 cttggccagaacaaaagtaccatcaaaatctcgagcacaaataccaatacctgtgcggttgagttgagaagagaaagcagcgtcgatattgcatttgtac 40490470  T
Q  265 ct 266  Q
    ||    
T  40490471 ct 40490472  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 4614798 - 4614758
Alignment:
Q  51 gtaagcttgaaatctgtttcaaaatcaacgttgtcaaattg 91  Q
    |||| ||||||||| |||||||||||||| |||||||||||    
T  4614798 gtaatcttgaaatcggtttcaaaatcaacattgtcaaattg 4614758  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 49702365 - 49702294
Alignment:
Q  20 gtcgtctcgagtagtatggaaggcatcacaa--gtaagcttgaaatctgtttcaaaatcaacgttgtcaaat 89  Q
    ||||||||||||||  || || |||||||||  ||||||||| |||| ||||||||||| ||| ||||||||    
T  49702365 gtcgtctcgagtagcgtgaaaagcatcacaattgtaagcttggaatccgtttcaaaatcgacgctgtcaaat 49702294  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 26932043 - 26932129
Alignment:
Q  1 tgcacccaaattcaaagtagtcgtctcgagtagtatggaaggcatcacaagtaagcttgaaatctgtttcaaaatcaacgttgtcaa 87  Q
    |||||||||||||| || |||||| || ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  26932043 tgcacccaaattcagagcagtcgtatcaagtagtatggaaggcatcacaagtaagcttggaatctgtttcgaaatcaacgttgtcaa 26932129  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 2246903 - 2246993
Alignment:
Q  1 tgcacccaaattca-aagtagtcgtctcgagtagtatggaaggcatcacaagtaagcttgaaatctgtttcaaaatcaacgttgtcaaattg 91  Q
    |||||||||||||| |||| ||| |||||| ||| |||| |||||||||||||||| ||| |||| ||||||||||| ||||||| ||||||    
T  2246903 tgcacccaaattcagaagt-gtcatctcgattagcatgggaggcatcacaagtaagtttggaatccgtttcaaaatcgacgttgttaaattg 2246993  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 26932204 - 26932242
Alignment:
Q  151 gggtagctaacaaccttggccaaaacaaaagtaccttca 189  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26932204 gggtagctaacaaccttggccaaaacaaaagtaccttca 26932242  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 19237624 - 19237534
Alignment:
Q  1 tgcacccaaattcaaagtagtcgtctcgagtagtatggaaggcatcacaagtaagcttgaaatctgtttcaaaatcaacgttgtcaaattg 91  Q
    ||||||||||||||||   ||| ||||||  || ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  19237624 tgcacccaaattcaaaagtgtcatctcgatgagcatggaaggcatcacaagtaagcttggaatccgtttcaaaatcaacgttgtcaaattg 19237534  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 36044875 - 36044822
Alignment:
Q  1 tgcacccaaattcaaagtagtcgtctcgagtagtatggaaggcatcacaagtaa 54  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  36044875 tgcacctaaattcaaagtagtcgtcttgagtagtatggaaggcatcacaagtaa 36044822  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 23622478 - 23622388
Alignment:
Q  1 tgcacccaaattcaaagtagtcgtctcgagtagtatggaaggcatcacaagtaagcttgaaatctgtttcaaaatcaacgttgtcaaattg 91  Q
    |||||||||||||| |   |||||||||||||| ||| || ||||||  ||||| ||||   || |||||||||||||| |||||||||||    
T  23622478 tgcacccaaattcagaaatgtcgtctcgagtagaatgaaaagcatcaagagtaatcttggtgtcggtttcaaaatcaacattgtcaaattg 23622388  T

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Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 11553267 - 11553194
Alignment:
Q  18 tagtcgtctcgagtagtatggaaggcatcacaagtaagcttgaaatctgtttcaaaatcaacgttgtcaaattg 91  Q
    |||||||||||||||| ||| ||||||||||||||||||||| ||||| |||| ||||||||||||||||||||    
T  11553267 tagtcgtctcgagtagcatgaaaggcatcacaagtaagcttggaatctatttcgaaatcaacgttgtcaaattg 11553194  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 11818625 - 11818713
Alignment:
Q  1 tgcacccaaattcaaagtagtcgtctcgagtagtatggaaggcatcacaagtaagcttgaaatctgtttcaaaatcaacgttgtcaaattg 91  Q
    |||||||||||||| ||| ||| |||||| ||| ||||||||||||| ||||||| ||| |||| ||||| ||||| ||||||||||||||    
T  11818625 tgcacccaaattcagagt-gtcatctcgattagcatggaaggcatcataagtaagtttggaatccgtttc-aaatcgacgttgtcaaattg 11818713  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 266
Target Start/End: Complemental strand, 11553123 - 11553008
Alignment:
Q  151 gggtagctaacaaccttggccaaaacaaaagtaccttcaaaatctcgaacataaatactaatcccagttcggttgaagtgaaatgagaaagcaacatcaa 250  Q
    ||||| ||||||||||| |||| || ||| || |||||  ||||||||||| ||||   ||| ||||| || ||||| ||| |||| || ||||||||||    
T  11553123 gggtaactaacaaccttagccataaaaaaggtgccttcggaatctcgaacacaaatgtcaataccagtgcgattgaaatgagatgataatgcaacatcaa 11553024  T
Q  251 tattacacttgtacct 266  Q
    | ||||||||||||||    
T  11553023 ttttacacttgtacct 11553008  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 33650782 - 33650738
Alignment:
Q  47 acaagtaagcttgaaatctgtttcaaaatcaacgttgtcaaattg 91  Q
    |||||||| |||||||||  ||||||||||||| |||||||||||    
T  33650782 acaagtaatcttgaaatcgatttcaaaatcaacattgtcaaattg 33650738  T

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Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 151 - 266
Target Start/End: Complemental strand, 4462373 - 4462258
Alignment:
Q  151 gggtagctaacaaccttggccaaaacaaaagtaccttcaaaatctcgaacataaatactaatcccagttcggttgaagtgaaatgagaaagcaacatcaa 250  Q
    ||||| ||||||||||| ||||||||||| ||||||||  ||||||||||| |||| | ||| ||||| || ||||| ||| ||||||| ||| ||||||    
T  4462373 gggtaactaacaaccttagccaaaacaaaggtaccttcggaatctcgaacacaaatgccaataccagtgcgattgaaatgagatgagaatgcatcatcaa 4462274  T
Q  251 tattacacttgtacct 266  Q
    | ||||||||||||||    
T  4462273 tgttacacttgtacct 4462258  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 24 - 91
Target Start/End: Complemental strand, 4462511 - 4462444
Alignment:
Q  24 tctcgagtagtatggaaggcatcacaagtaagcttgaaatctgtttcaaaatcaacgttgtcaaattg 91  Q
    |||||||||| ||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  4462511 tctcgagtagcatgaaaggcatcacaagtaagcttggaatctgtttcgaaatcaacgttgtcaaattg 4462444  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 13685966 - 13685876
Alignment:
Q  1 tgcacccaaattca-aagtagtcgtctcgagtagtatggaaggcatcacaagtaagcttgaaatctgtttcaaaatcaacgttgtcaaattg 91  Q
    |||||||||||||| |||| |||| || || ||| |||||| |||||||||||||||||| |||| ||||||||| | ||||||||||||||    
T  13685966 tgcacccaaattcagaagt-gtcgccttgattagcatggaatgcatcacaagtaagcttggaatccgtttcaaaaccgacgttgtcaaattg 13685876  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 48770053 - 48769981
Alignment:
Q  18 tagtcgtctcgagtagtatggaaggcatcacaagtaagcttgaaatctgtttcaaaatcaacgttgtcaaattg 91  Q
    |||||||||||||||| | | ||||| ||||||||||||||  |||||||||||||||||||||||||||||||    
T  48770053 tagtcgtctcgagtagca-gaaaggcgtcacaagtaagcttcgaatctgtttcaaaatcaacgttgtcaaattg 48769981  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 33611234 - 33611305
Alignment:
Q  20 gtcgtctcgagtagtatggaaggcatcacaagtaagcttgaaatctgtttcaaaatcaacgttgtcaaattg 91  Q
    |||||||||| ||| |||||| |||||||||||||||||  |||||||||||||||| || |||||||||||    
T  33611234 gtcgtctcgattagcatggaatgcatcacaagtaagcttagaatctgtttcaaaatcgacattgtcaaattg 33611305  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 266
Target Start/End: Complemental strand, 48769910 - 48769795
Alignment:
Q  151 gggtagctaacaaccttggccaaaacaaaagtaccttcaaaatctcgaacataaatactaatcccagttcggttgaagtgaaatgagaaagcaacatcaa 250  Q
    ||||| |||||||| || ||||||||||| || ||||   ||||||||||| |||| | ||| | ||| || ||||| ||| ||||||| ||| ||||||    
T  48769910 gggtaactaacaactttagccaaaacaaaggtgcctttggaatctcgaacacaaatgccaatactagtacgattgaaatgagatgagaatgcagcatcaa 48769811  T
Q  251 tattacacttgtacct 266  Q
    | ||||||||||||||    
T  48769810 tgttacacttgtacct 48769795  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 23509055 - 23509122
Alignment:
Q  24 tctcgagtagtatggaaggcatcacaagtaagcttgaaatctgtttcaaaatcaacgttgtcaaattg 91  Q
    |||||| ||| |||||||||||||||| |||||||| ||||  |||||||||| ||||||| ||||||    
T  23509055 tctcgattagcatggaaggcatcacaattaagcttggaatccatttcaaaatcgacgttgtaaaattg 23509122  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 16416540 - 16416469
Alignment:
Q  20 gtcgtctcgagtagtatggaaggcatcacaagtaagcttgaaatctgtttcaaaatcaacgttgtcaaattg 91  Q
    |||||||||| ||  ||| ||| ||||| ||||||||||| |||| ||||||||| | ||||||||||||||    
T  16416540 gtcgtctcgattaacatgcaagacatcagaagtaagcttggaatccgtttcaaaaccgacgttgtcaaattg 16416469  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 18342424 - 18342379
Alignment:
Q  161 caaccttggccaaaacaaaagtaccttcaaaatctcgaacataaat 206  Q
    ||||||||||||||||||| ||||||||| | ||||||||| ||||    
T  18342424 caaccttggccaaaacaaatgtaccttcagagtctcgaacacaaat 18342379  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 18356898 - 18356853
Alignment:
Q  161 caaccttggccaaaacaaaagtaccttcaaaatctcgaacataaat 206  Q
    ||||||||||||||||||| ||||||| ||| ||||||||| ||||    
T  18356898 caaccttggccaaaacaaatgtaccttgaaagtctcgaacacaaat 18356853  T

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