View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2067_low_7 (Length: 263)
Name: NF2067_low_7
Description: NF2067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2067_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 4215625 - 4215382
Alignment:
| Q |
1 |
aacaaatgaagcagtgatttttgccatagtgtatgaatgagtatttttatttttctttattgagtttgtttagcatggaatgaaattggcttcatatgaa |
100 |
Q |
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| T |
4215625 |
aacaaatgaagcagtgatttttgccatagtgtatgaatgagtatttttatttttctttattgagtttgtttagcatggaatgaaattggcttcatatgaa |
4215526 |
T |
|
| Q |
101 |
tccaatttatagacctattgattaccttaaatgagaagtgaatgaattaattgtgcctatgcaagttcaaaaaataatttcacaaaattaaggtaaagat |
200 |
Q |
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| T |
4215525 |
tccaatttatagatctattgatttccttaaatgagaagtgaatgaattaattgtgcctacgcaagttcaaaaaataatttcacaaaattaaggtaaagat |
4215426 |
T |
|
| Q |
201 |
gaaaattgtgtgggagccatgtcttaaatactatggttgtctag |
244 |
Q |
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| T |
4215425 |
gaaaattgtgtgggagccatgtcttaaatattatggttgtctag |
4215382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 66 - 219
Target Start/End: Complemental strand, 4218131 - 4217979
Alignment:
| Q |
66 |
ttgtttagcatggaatgaaattggcttcatatgaatccaatttatagacctattgattaccttaaatgagaagtgaatgaattaattgtgcctatgcaag |
165 |
Q |
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| T |
4218131 |
ttgttttgcatggaataaaattgactcaatagtactccaatttatagaattgttgatttctctaaatgataagtgaatgaattaattgtggttttgcgtg |
4218032 |
T |
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| Q |
166 |
ttcaaaaaataatttcacaaaattaaggtaaagatgaaaattgtgtgggagcca |
219 |
Q |
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| T |
4218031 |
at-agaaaacaatttcacaaaattagggtaaagctgaaaactgtgtgggagcca |
4217979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 4053899 - 4053845
Alignment:
| Q |
101 |
tccaatttatagacctattgattaccttaaatgagaagtgaatgaattaattgtg |
155 |
Q |
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| T |
4053899 |
tccaatttataggactattgattaccttaaatgagaagtgaatcaattaaatgtg |
4053845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 3925020 - 3925074
Alignment:
| Q |
101 |
tccaatttatagacctattgattaccttaaatgagaagtgaatgaattaattgtg |
155 |
Q |
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| T |
3925020 |
tccaatttataggactaattattaccttaaatgagaagtgaatcaattaaatgtg |
3925074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 11952603 - 11952648
Alignment:
| Q |
104 |
aatttatagacctattgattaccttaaatgagaagtgaatgaatta |
149 |
Q |
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| T |
11952603 |
aatttatagaactagtgatttccttaaatgagaagtgaatgaatta |
11952648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 54726884 - 54726832
Alignment:
| Q |
1 |
aacaaatgaagcagtgatttttgccatagtgtatgaatgagtatttttatttt |
53 |
Q |
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|||||||||||||||| ||||||||||| | || |||| |||||||||||||| |
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| T |
54726884 |
aacaaatgaagcagtggtttttgccataatataagaatcagtatttttatttt |
54726832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 150
Target Start/End: Complemental strand, 5388922 - 5388875
Alignment:
| Q |
103 |
caatttatagacctattgattaccttaaatgagaagtgaatgaattaa |
150 |
Q |
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|||||||| || ||| ||||| |||||||||||||||||||||||||| |
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| T |
5388922 |
caatttatcgaactaatgatttccttaaatgagaagtgaatgaattaa |
5388875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 150
Target Start/End: Complemental strand, 5398462 - 5398416
Alignment:
| Q |
105 |
atttatagacctat-tgattaccttaaatgagaagtgaatgaattaa |
150 |
Q |
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||||||||| |||| ||||| |||||||||||||||||||||||||| |
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| T |
5398462 |
atttatagaactatatgatttccttaaatgagaagtgaatgaattaa |
5398416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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