View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2067_low_9 (Length: 249)
Name: NF2067_low_9
Description: NF2067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2067_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 91 - 240
Target Start/End: Original strand, 52770117 - 52770266
Alignment:
| Q |
91 |
aatttgaaggaatgtgaaggttgcttttcttctcatttttctaattctggtgttacatacatgatcaacacattctaactactgtttttcttacttgtcc |
190 |
Q |
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| T |
52770117 |
aatttgaaggaatgtgaatgttgcttttcttctcatttttctaattctggtgttacatacatgatcaacacattctaactactgtttttcttacttgtcc |
52770216 |
T |
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| Q |
191 |
annnnnnnatatctcattaagaccaactgcatacattcaaattttctgtg |
240 |
Q |
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| T |
52770217 |
atttttttatatctcattaagaccaactgcatacattcaaattttctgtg |
52770266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 52769990 - 52770083
Alignment:
| Q |
1 |
taatactatttcttctattctatattaatattaattcaaaaatactaatttctttcataacaactacaacagtaacaacattaattaattaatt |
94 |
Q |
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| T |
52769990 |
taatactctttcttctattctatattaatattaattcaaaaatactaatttctttcataacaactacaacagcaacaacattaattaattaatt |
52770083 |
T |
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