View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20680_low_1 (Length: 407)
Name: NF20680_low_1
Description: NF20680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20680_low_1 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 149 - 407
Target Start/End: Original strand, 13387808 - 13388067
Alignment:
| Q |
149 |
tattcatcaacatcaagctcaaatatattacttaa-ttggaaaagaacaaagccttgacaatgcaaaagtcttaaacggaaattattatcgttccaatat |
247 |
Q |
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| T |
13387808 |
tattcatcaacatcaagctcaaatatattacttaaattggaaaagaacaaagcctt-acaatgcaaaagtcttaaacggaaattattatcgttccaatat |
13387906 |
T |
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| Q |
248 |
atgacaggtttgaaatgaaaattaaataccgtgtg-nnnnnnncaataattaactaccattgtgggcaaatggtaattatttgagggtatttttgttgtt |
346 |
Q |
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| T |
13387907 |
atgacaggtttgaaatgaaaattaaataccgtgtgaaaaagaacaataattaactaccattgtgggcaaatggtaattatttgagggtatttttgttgtt |
13388006 |
T |
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| Q |
347 |
agtttgaactttgaagtgcatgtggacaaactataagcgtctaaagaataatctacccacc |
407 |
Q |
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| T |
13388007 |
agtttgaactttgaagtgcatgtggacaaactataagcgtctaaagaacaattttcccacc |
13388067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 21 - 150
Target Start/End: Original strand, 13387396 - 13387526
Alignment:
| Q |
21 |
atttagaaacgatactt-atagtcaaaacaaatcataattcgccagtaaagtgcaacttttctaccagttgccattttcactttgtacagattgctgcaa |
119 |
Q |
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| T |
13387396 |
attttgaaacgatactttaaagtcaaaacaaatcataattcgccagtaaagtgcaacttttctaccagttgccattttcactttgtacagattgctgcaa |
13387495 |
T |
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| Q |
120 |
tattcaacaaaaagttaaattacgcttaata |
150 |
Q |
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| T |
13387496 |
tattcaacaaaaagttaaattacgcttaata |
13387526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 54 - 142
Target Start/End: Original strand, 35627063 - 35627151
Alignment:
| Q |
54 |
ataattcgccagtaaagtgcaacttttctaccagttgccattttcactttgtacagattgctgcaatattcaacaaaaagttaaattac |
142 |
Q |
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| T |
35627063 |
ataattcgccagcaaagtgctatttttccactagttgccattttcaatttgtacagcttgctgcaatatttaacaaaaagttaaattac |
35627151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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