View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20681_high_11 (Length: 307)

Name: NF20681_high_11
Description: NF20681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20681_high_11
NF20681_high_11
[»] chr4 (8 HSPs)
chr4 (21-285)||(15349237-15349501)
chr4 (21-285)||(14687165-14687435)
chr4 (21-281)||(42711168-42711434)
chr4 (21-174)||(45240250-45240404)
chr4 (21-174)||(11498006-11498159)
chr4 (21-161)||(18290701-18290841)
chr4 (21-175)||(10629417-10629568)
chr4 (55-164)||(11918125-11918233)
[»] chr7 (14 HSPs)
chr7 (21-285)||(540152-540416)
chr7 (21-285)||(16327160-16327430)
chr7 (21-285)||(9581453-9581723)
chr7 (21-285)||(9729305-9729575)
chr7 (21-285)||(4311279-4311548)
chr7 (21-285)||(8783482-8783752)
chr7 (122-285)||(14223144-14223313)
chr7 (23-165)||(4462102-4462244)
chr7 (21-175)||(23513736-23513890)
chr7 (21-175)||(13741088-13741242)
chr7 (23-171)||(5395811-5395959)
chr7 (21-175)||(12565670-12565824)
chr7 (21-178)||(10439731-10439888)
chr7 (21-59)||(14223108-14223146)
[»] chr1 (3 HSPs)
chr1 (21-285)||(27045424-27045688)
chr1 (71-169)||(22626469-22626567)
chr1 (21-174)||(21785836-21785986)
[»] chr6 (9 HSPs)
chr6 (21-285)||(22062904-22063168)
chr6 (29-285)||(19586975-19587222)
chr6 (21-186)||(23519144-23519309)
chr6 (21-175)||(18188962-18189116)
chr6 (21-164)||(17818194-17818337)
chr6 (21-175)||(18852688-18852838)
chr6 (35-82)||(29685293-29685340)
chr6 (22-79)||(24390266-24390326)
chr6 (35-79)||(18977624-18977668)
[»] chr3 (11 HSPs)
chr3 (21-285)||(6813419-6813683)
chr3 (21-288)||(12777897-12778170)
chr3 (29-285)||(15024254-15024516)
chr3 (23-174)||(20562017-20562168)
chr3 (23-174)||(20564325-20564476)
chr3 (21-175)||(13090200-13090351)
chr3 (23-174)||(20559709-20559860)
chr3 (21-175)||(9362350-9362501)
chr3 (21-175)||(13096380-13096531)
chr3 (21-83)||(3246906-3246968)
chr3 (21-157)||(20153465-20153598)
[»] scaffold0090 (1 HSPs)
scaffold0090 (21-285)||(29312-29582)
[»] chr8 (4 HSPs)
chr8 (21-285)||(20000852-20001119)
chr8 (21-174)||(20040462-20040615)
chr8 (21-178)||(21855169-21855323)
chr8 (21-174)||(17619412-17619562)
[»] scaffold0035 (1 HSPs)
scaffold0035 (21-285)||(51946-52216)
[»] chr5 (7 HSPs)
chr5 (21-285)||(23712100-23712370)
chr5 (21-169)||(20446238-20446386)
chr5 (21-175)||(21282303-21282458)
chr5 (21-161)||(18487456-18487596)
chr5 (21-164)||(23602033-23602173)
chr5 (21-175)||(24939200-24939351)
chr5 (21-158)||(24218516-24218650)
[»] scaffold0485 (1 HSPs)
scaffold0485 (21-285)||(11297-11568)
[»] chr2 (2 HSPs)
chr2 (21-183)||(25339499-25339661)
chr2 (38-175)||(24500997-24501134)
[»] scaffold0566 (1 HSPs)
scaffold0566 (21-174)||(1275-1428)
[»] scaffold0222 (1 HSPs)
scaffold0222 (38-161)||(18509-18632)
[»] scaffold0220 (1 HSPs)
scaffold0220 (56-175)||(11741-11860)
[»] scaffold0026 (1 HSPs)
scaffold0026 (71-175)||(17034-17138)
[»] scaffold0113 (1 HSPs)
scaffold0113 (21-175)||(38026-38177)
[»] scaffold0012 (3 HSPs)
scaffold0012 (21-164)||(12837-12977)
scaffold0012 (21-164)||(8728-8868)
scaffold0012 (21-65)||(8665-8709)
[»] scaffold1184 (1 HSPs)
scaffold1184 (45-79)||(537-571)


Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 21 - 285
Target Start/End: Original strand, 15349237 - 15349501
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15349237 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaa 15349336  T
Q  121 acaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgaaaaagtagtataaaagtttagataatagttc 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  15349337 acaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttc 15349436  T
Q  221 tcatctatcctcttgatcccttgattcacactcacccgaaacttcttagcaataaaagtgatgat 285  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  15349437 tcatctatcctcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 15349501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 21 - 285
Target Start/End: Original strand, 14687165 - 14687435
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||    
T  14687165 catcatcatcattatcttgtacctgtgggttagtaccaacataaagcaaattttccaccgcctccggattagtaatgtccgaattaggtagcataatcaa 14687264  T
Q  121 acaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgaaaaagt------agtataaaagtttagataa 214  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||      |||||| ||||||||||||    
T  14687265 acaattagctctaataattctccatttatattggtaattgtgagtagggtcatgggttctaaggaatgacaaagtagtgagagtatataagtttagataa 14687364  T
Q  215 tagttctcatctatcctcttgatcccttgattcacactcacccgaaacttcttagcaataaaagtgatgat 285  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  14687365 tagttctcctctatcctcttgatcccttgattcacactcaccccaaacttcttagcaataaaagtgatgat 14687435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 21 - 281
Target Start/End: Original strand, 42711168 - 42711434
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  42711168 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaa 42711267  T
Q  121 acaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgaaaaagt------agtataaaagtttagataa 214  Q
    |||||||| |||||| ||||||||||||||||||||||| |||||| ||||||||||| ||||||| || |||||      |||||| |||||| |||||    
T  42711268 acaattagttctaataattctccattcatattggtaattatgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataa 42711367  T
Q  215 tagttctcatctatcctcttgatcccttgattcacactcacccgaaacttcttagcaataaaagtga 281  Q
    || || ||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||    
T  42711368 taattttcatctatcctcttgatcctttgattcacactcaccctaaacctcttagcaataaaagtga 42711434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 174
Target Start/End: Original strand, 45240250 - 45240404
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    |||||||||||||||  ||||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||| | | |||| ||||||||||||||    
T  45240250 catcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatattcgaatttggtagaataatcaa 45240349  T
Q  121 acaa-ttagctctaatgattctccattcatattggtaattgtgagtagggtcatg 174  Q
     ||| |||||  || ||| |||||| ||||||||||||||||||| |||| ||||    
T  45240350 gcaatttagcgttattgactctccactcatattggtaattgtgagaagggccatg 45240404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 21 - 174
Target Start/End: Original strand, 11498006 - 11498159
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    |||||||||||||||  ||||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||| |   |||||||||||||||||||    
T  11498006 catcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatatttgaattaggtagaataatcaa 11498105  T
Q  121 acaattagctctaatgattctccattcatattggtaattgtgagtagggtcatg 174  Q
     |||||| |   | ||| |||||| |||||||||||||||| || |||||||||    
T  11498106 gcaattaacataattgactctccactcatattggtaattgttagaagggtcatg 11498159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 161
Target Start/End: Complemental strand, 18290841 - 18290701
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    |||||||||||||||  ||||||||||||||||| |||||||||| ||| ||||| | |||||||||||||||||| ||  |||||||||||||||||||    
T  18290841 catcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctatcacctccggattagtaatatctgaattaggtagaataatcaa 18290742  T
Q  121 acaattagctctaatgattctccattcatattggtaattgt 161  Q
      |||| ||  || ||| | |||| ||||||||||||||||    
T  18290741 taaatttgcattattgaatttccactcatattggtaattgt 18290701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 175
Target Start/End: Complemental strand, 10629568 - 10629417
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    |||||||||||||||  ||||||||||||||||| ||||||||||   | ||||| ||| ||| |||||||||||| ||  |||||||||||||||||||    
T  10629568 catcatcaccatcattgtgtacctgtgggttagtgccaacataaa---agttttctaccgccttcggattagtaatatctgaattaggtagaataatcaa 10629472  T
Q  121 acaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgg 175  Q
      |||||||  || ||| |||||| ||||||||| ||||||||| |||| |||||    
T  10629471 gaaattagcattattgactctccactcatattgggaattgtgagaagggccatgg 10629417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 55 - 164
Target Start/End: Original strand, 11918125 - 11918233
Alignment:
Q  55 accaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatgattctccattcatattgg 154  Q
    ||||||||||| ||| ||||||||||||| ||| ||||| ||||||  ||||||||||||||||||| ||||||| ||| ||| | |||| |||||||||    
T  11918125 accaacataaaacaatttttccaccaccttcgggttagttatgtccggattaggtagaataatcaaa-aattagccctattgactttccactcatattgg 11918223  T
Q  155 taattgtgag 164  Q
    ||||||||||    
T  11918224 taattgtgag 11918233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 21 - 285
Target Start/End: Original strand, 540152 - 540416
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  540152 catcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaa 540251  T
Q  121 acaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgaaaaagtagtataaaagtttagataatagttc 220  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  540252 acaattagctttaatgattctcctttcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttc 540351  T
Q  221 tcatctatcctcttgatcccttgattcacactcacccgaaacttcttagcaataaaagtgatgat 285  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  540352 tcatctatcctcttgatcccttgattcacactcaccccaaacttcttagcaataaaagtgatgat 540416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 21 - 285
Target Start/End: Original strand, 16327160 - 16327430
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  16327160 catcaccaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaatagtcaa 16327259  T
Q  121 acaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgaaaaagt------agtataaaagtttagataa 214  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||      |||||| ||||||||||||    
T  16327260 acaattagctctaataattctccattcatattggtaattgtgagtagggtcatgggttataaggaaggacaaagtagtaagagtatataagtttagataa 16327359  T
Q  215 tagttctcatctatcctcttgatcccttgattcacactcacccgaaacttcttagcaataaaagtgatgat 285  Q
    ||||| || |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  16327360 tagttttcctctatcctcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 16327430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 21 - 285
Target Start/End: Complemental strand, 9581723 - 9581453
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  9581723 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccagattagtaatgtccgaattaggtagaataatcaa 9581624  T
Q  121 acaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgaaaaagt------agtataaaagtttagataa 214  Q
    |||||||| |||||| || |||||||||||||| |||||||||||| ||||||||||| ||||||| || |||||      |||||| |||||| |||||    
T  9581623 acaattagttctaataatcctccattcatattgataattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataa 9581524  T
Q  215 tagttctcatctatcctcttgatcccttgattcacactcacccgaaacttcttagcaataaaagtgatgat 285  Q
    || || ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  9581523 taattttcatctatcctcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 9581453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 21 - 285
Target Start/End: Complemental strand, 9729575 - 9729305
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  9729575 catcatcaccatcatcttgtacctgtggattagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaataatcaa 9729476  T
Q  121 acaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgaaaaagt------agtataaaagtttagataa 214  Q
    |||||||| |||||| || |||||||||||||| |||||||||||| ||||||||||| ||||||| || |||||      |||||| |||||| |||||    
T  9729475 acaattagttctaataatcctccattcatattgataattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataa 9729376  T
Q  215 tagttctcatctatcctcttgatcccttgattcacactcacccgaaacttcttagcaataaaagtgatgat 285  Q
    || || ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  9729375 taattttcatctatcctcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 9729305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 21 - 285
Target Start/End: Complemental strand, 4311548 - 4311279
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4311548 catcatcaccatcatcttgtacatgtgggttagtaccaacgtaaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaa 4311449  T
Q  121 acaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgaaaaagt------agtataaaagtttagataa 214  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||| || || |||||      |||||| |||| |||||||    
T  4311448 acaattagctctaataattctccattcatattggtaattgtgagtagggccatgggttctaagaaaggacaaagtagtgagagtatataagtctagataa 4311349  T
Q  215 tagttctcatctatcctcttgatcccttgattcacactcacccgaaacttcttagcaataaaagtgatgat 285  Q
    |||||| | ||||||||||||||| |||||||||||||| ||| ||||||| ||| |||||| ||||||||    
T  4311348 tagttcccctctatcctcttgatctcttgattcacactc-ccccaaacttcctagaaataaaggtgatgat 4311279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 21 - 285
Target Start/End: Original strand, 8783482 - 8783752
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    ||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||    
T  8783482 catcaccaccatgatcttgtacatgtgggttagtaccaacataaagcaaattttccaccacctccggattagttatgtccgaattagggagaataatcaa 8783581  T
Q  121 acaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgaaaaagt------agtataaaagtttagataa 214  Q
    | ||||| || |||| ||||||| |||||||| |||||||||||||||| |||||||| ||||||| |  |||||      |||||| |||| |||||||    
T  8783582 aaaattatctgtaataattctcctttcatatttgtaattgtgagtagggccatgggttgtaaggaagggcaaagtagtgagagtatataagtctagataa 8783681  T
Q  215 tagttctcatctatcctcttgatcccttgattcacactcacccgaaacttcttagcaataaaagtgatgat 285  Q
    |||||| | ||||||| |||||||| ||||||||||||||||| ||||||| |||||||||| ||||||||    
T  8783682 tagttcccctctatccccttgatccattgattcacactcaccccaaacttcctagcaataaaggtgatgat 8783752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 122 - 285
Target Start/End: Original strand, 14223144 - 14223313
Alignment:
Q  122 caattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgaaaaagtagt------ataaaagtttagataat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||      ||| |||||||||||||    
T  14223144 caattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggctttaaggaatgacaaagtagtgagagtatataagtttagataat 14223243  T
Q  216 agttctcatctatcctcttgatcccttgattcacactcacccgaaacttcttagcaataaaagtgatgat 285  Q
    ||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  14223244 agttctcctctttcctcttgatcccttgattcacactcaccccaaacttcttagcaataaaagtgatgat 14223313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 165
Target Start/End: Original strand, 4462102 - 4462244
Alignment:
Q  23 tcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaaac 122  Q
    |||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||| ||| ||||| |||  |  ||||||||||||||||||||    
T  4462102 tcatcaccatcatcatgtaccagtgggttagtaccaatataaagcaaattttccaccaccttcgggttagttatgaacggattaggtagaataatcaaac 4462201  T
Q  123 aattagctctaatgattctccattcatattggtaattgtgagt 165  Q
    ||| ||||||||||||| || | |||||||||| |||||||||    
T  4462202 aatgagctctaatgattttctaatcatattggtcattgtgagt 4462244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 175
Target Start/End: Complemental strand, 23513890 - 23513736
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    |||||||||||||||  ||||||||||||||||| ||||||||||  || ||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  23513890 catcatcaccatcattgtgtacctgtgggttagtgccaacataaacaaagttttctaccacctccggattagtaatgtccgaattaggtagaataatcaa 23513791  T
Q  121 acaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgg 175  Q
      |||||||  || ||| |||||| |||||| |||||||||||| |||| |||||    
T  23513790 gtaattagcattattgactctccactcatataggtaattgtgagaagggccatgg 23513736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 175
Target Start/End: Complemental strand, 13741242 - 13741088
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    |||||||||||||||  ||||||||||| ||||| ||||||||||   | ||||| |||||||||| ||||||||||||| |||||||||||||||||||    
T  13741242 catcatcaccatcattgtgtacctgtggattagtgccaacataaacatagttttctaccacctccgaattagtaatgtccgaattaggtagaataatcaa 13741143  T
Q  121 acaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgg 175  Q
     |||||| |  || ||| |||||| ||||||||||||||||||| |||| |||||    
T  13741142 gcaattatcattattgactctccactcatattggtaattgtgagaagggccatgg 13741088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 23 - 171
Target Start/End: Complemental strand, 5395959 - 5395811
Alignment:
Q  23 tcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaaac 122  Q
    |||||||||||||  ||||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||| ||  |||||||||||||||||||      
T  5395959 tcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatatctgaattaggtagaataatcaaga 5395860  T
Q  123 aattagctctaatgattctccattcatattggtaattgtgagtagggtc 171  Q
    |||||||  || |||  ||||| |||| ||||||||||| || ||||||    
T  5395859 aattagcattattgacgctccactcattttggtaattgttagaagggtc 5395811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 21 - 175
Target Start/End: Complemental strand, 12565824 - 12565670
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    |||||||||||||||  |||||| ||||||||||||||||||||| ||| ||||| |||||||||| ||||||||| ||  ||||||||  |||||||||    
T  12565824 catcatcaccatcattgtgtaccggtgggttagtaccaacataaaccaagttttctaccacctccgaattagtaatatctgaattaggttaaataatcaa 12565725  T
Q  121 acaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgg 175  Q
      |||||||  || ||| |||||| |||||||||||||||| || |||| |||||    
T  12565724 gaaattagcattattgactctccactcatattggtaattgttagaagggccatgg 12565670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 21 - 178
Target Start/End: Original strand, 10439731 - 10439888
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    |||||||||||||||  ||||||||||||||||| |||||||||| ||| ||||| ||||||| | | |||||||| ||  |||||||||||||||||||    
T  10439731 catcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccaccttcagcttagtaatatctgaattaggtagaataatcaa 10439830  T
Q  121 acaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggtt 178  Q
      ||||| |  || ||| |||||| ||||||||||||||||||| ||||  |||||||    
T  10439831 gaaattatcattattgactctccactcatattggtaattgtgagaagggctatgggtt 10439888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 14223108 - 14223146
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaa 59  Q
    |||||||||||||||||||||||||||||||||||||||    
T  14223108 catcatcaccatcatcttgtacctgtgggttagtaccaa 14223146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 21 - 285
Target Start/End: Complemental strand, 27045688 - 27045424
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  27045688 catcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaa 27045589  T
Q  121 acaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgaaaaagtagtataaaagtttagataatagttc 220  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27045588 acaattagctctaatgattctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttc 27045489  T
Q  221 tcatctatcctcttgatcccttgattcacactcacccgaaacttcttagcaataaaagtgatgat 285  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  27045488 tcatctatcctcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 27045424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 71 - 169
Target Start/End: Original strand, 22626469 - 22626567
Alignment:
Q  71 ttttccaccacctccggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaattgtgagtaggg 169  Q
    ||||| |||||| ||||||||||||| ||| ||||||||||||||||||| ||||||||  || ||| |||||| ||||||||||||||||||| ||||    
T  22626469 ttttctaccaccaccggattagtaatatccgaattaggtagaataatcaagcaattagcattattgactctccactcatattggtaattgtgagaaggg 22626567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 174
Target Start/End: Original strand, 21785836 - 21785986
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    |||||||||||| ||  ||||||||||||||||| ||||||||||   | ||||| ||||||| |||||||||||| ||  |||||||||||| ||||||    
T  21785836 catcatcaccattattgtgtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaaaaatcaa 21785932  T
Q  121 acaattagctctaatgattctccattcatattggtaattgtgagtagggtcatg 174  Q
      |||||||  || ||| |||||| |||| |||||| |||| || |||| ||||    
T  21785933 gaaattagcattattgactctccactcatgttggtacttgttagaagggccatg 21785986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 21 - 285
Target Start/End: Original strand, 22062904 - 22063168
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  22062904 catcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaa 22063003  T
Q  121 acaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgaaaaagtagtataaaagtttagataatagttc 220  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  22063004 acaattagctctaatgattctccatgcatgttggtaattgtgagtagagtcatggtttttaaggaatgacaaagtagtataaaagtttagataatagttc 22063103  T
Q  221 tcatctatcctcttgatcccttgattcacactcacccgaaacttcttagcaataaaagtgatgat 285  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  22063104 tcatctatcctcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 22063168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 29 - 285
Target Start/End: Original strand, 19586975 - 19587222
Alignment:
Q  29 ccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaaacaattag 128  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||               ||||||||||||||||||||||    
T  19586975 ccatcatcttgtacctgtgggttaataccaacataaatcaaattttccaccacctccagatta---------------ggtagaataatcaaacaattag 19587059  T
Q  129 ctctaatgattctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgaaaaagt------agtataaaagtttagataatagttctc 222  Q
    ||||||| ||||||| || |||||||||||||| ||||||  |||||||| ||||||| || |||||      |||||| |||| |||||||||||||      
T  19587060 ctctaataattctccgtttatattggtaattgtaagtaggtccatgggttctaaggaaggacaaagtagtgagagtatataagtgtagataatagttcct 19587159  T
Q  223 atctatcctcttgatcccttgattcacactcacccgaaacttcttagcaataaaagtgatgat 285  Q
     ||||||||||||||||||||||||| |||||||| ||||||| |||||||||| ||||||||    
T  19587160 ctctatcctcttgatcccttgattcagactcaccccaaacttcctagcaataaaggtgatgat 19587222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 21 - 186
Target Start/End: Original strand, 23519144 - 23519309
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    |||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||    
T  23519144 catcatcaccatcatcatgtacccgtgggttagttccaacataaagcaaattttccaccatctccggattagttatgtccaaataaggtagaataatcaa 23519243  T
Q  121 acaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggttttaaggaa 186  Q
    ||||||||| ||| | | | |||   |||||||||| ||||||| ||||||||||||| |||||||    
T  23519244 acaattagccctatttactttccgcacatattggtagttgtgagaagggtcatgggttataaggaa 23519309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 21 - 175
Target Start/End: Original strand, 18188962 - 18189116
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    |||||||||||||||  ||||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||| | ||| |||||||||||||||||||    
T  18188962 catcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtattatccgaattaggtagaataatcaa 18189061  T
Q  121 acaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgg 175  Q
     ||||||||  || ||| |||||| ||||||||||||||||||| ||||||||||    
T  18189062 gcaattagcattattgactctccactcatattggtaattgtgagaagggtcatgg 18189116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 21 - 164
Target Start/End: Complemental strand, 17818337 - 17818194
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    |||||||||||||||  ||||||||||||||||| |||||||||| ||| ||||| ||||||| |||||||||||| ||  |||||||||||||||||||    
T  17818337 catcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccacctacggattagtaatatctgaattaggtagaataatcaa 17818238  T
Q  121 acaattagctctaatgattctccattcatattggtaattgtgag 164  Q
      |||||||  || ||| |||||| |||||||||||||||||||    
T  17818237 gaaattagcattattgactctccactcatattggtaattgtgag 17818194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 21 - 175
Target Start/End: Complemental strand, 18852838 - 18852688
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    |||||| |||||||| |||||||||||||||||| ||||||||||   ||||||| |||| ||||||||||||||| ||  ||||||||||||||||| |    
T  18852838 catcattaccatcattttgtacctgtgggttagtgccaacataaa---aattttctaccatctccggattagtaatatctgaattaggtagaataatc-a 18852743  T
Q  121 acaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgg 175  Q
    | || || |  || | | |||||| ||||||||||||||||||| |||| |||||    
T  18852742 agaaataacattatttactctccactcatattggtaattgtgagaagggccatgg 18852688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 29685340 - 29685293
Alignment:
Q  35 tcttgtacctgtgggttagtaccaacataaagcaaattttccaccacc 82  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  29685340 tcttgtacctgtgggttagtactaacataaagcaaattttccaccacc 29685293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 24390266 - 24390326
Alignment:
Q  22 atcatcaccatcatctt---gtacctgtgggttagtaccaacataaagcaaattttccacc 79  Q
    ||||||||||| |||||   ||||||||  |||||||||| ||||||||||||||||||||    
T  24390266 atcatcaccatgatcttcctgtacctgtttgttagtaccagcataaagcaaattttccacc 24390326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 18977668 - 18977624
Alignment:
Q  35 tcttgtacctgtgggttagtaccaacataaagcaaattttccacc 79  Q
    |||||||| |||  |||||||||| ||||||||||||||||||||    
T  18977668 tcttgtacatgtttgttagtaccagcataaagcaaattttccacc 18977624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 21 - 285
Target Start/End: Complemental strand, 6813683 - 6813419
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6813683 catcattaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaa 6813584  T
Q  121 acaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgaaaaagtagtataaaagtttagataatagttc 220  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  6813583 acaattagctctaatgattctccatgcatattggtaattgtgagtagagtcatggtttttaaggaatgacaaagtagtataaaagtttagataatagttc 6813484  T
Q  221 tcatctatcctcttgatcccttgattcacactcacccgaaacttcttagcaataaaagtgatgat 285  Q
    |||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||    
T  6813483 tcatctatcctcttgatcccttgattcatactcacctcaaacttcttagcaataaaagtgatgat 6813419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 21 - 288
Target Start/End: Original strand, 12777897 - 12778170
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  12777897 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccgaattagtaatgtccgaattaggtagaataatcaa 12777996  T
Q  121 acaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgaaaaagt------agtataaaagtttagataa 214  Q
    |||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||| || |||||      |||| | |||||| |||||    
T  12777997 acaattagttctaataattctccattcatattgataattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtaaataagtttggataa 12778096  T
Q  215 tagttctcatctatcctcttgatcccttgattcacactcacccgaaacttcttagcaataaaagtgatgatgtc 288  Q
    || || || |||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||    
T  12778097 taattttcctctatcctcttgatcccttgattcacactcaccctaaacctcttagcaataaaagggatgatgtc 12778170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 29 - 285
Target Start/End: Complemental strand, 15024516 - 15024254
Alignment:
Q  29 ccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaaacaattag 128  Q
    |||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||   ||||||||||||||| ||||||||||    
T  15024516 ccatcatcttgtacatgtggattagtaccaacataatgcaaattttccaccacctccggattagttatgtctggattaggtagaataataaaacaattag 15024417  T
Q  129 ctctaatgattctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgaaaaagt------agtataaaagtttagataatagttctc 222  Q
    ||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||      |||||| |||| ||||||||||| | |    
T  15024416 ctctattaattctccattcatattggtaattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtatataagtatagataatagtaccc 15024317  T
Q  223 atctatcctcttgatcccttgattcacactcacccgaaacttcttagcaataaaagtgatgat 285  Q
     |||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||    
T  15024316 ctctatcctcttgatcccttgattcacactcaccccaaactttctagcaataaaagtgatgat 15024254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 23 - 174
Target Start/End: Complemental strand, 20562168 - 20562017
Alignment:
Q  23 tcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaaac 122  Q
    |||||||||||||  ||||||||||||||||| |||||| ||| | | ||||| |||||||||| ||||||||| ||  |||||||||||||||||||      
T  20562168 tcatcaccatcattgtgtacctgtgggttagtgccaacacaaacctagttttctaccacctccgaattagtaatatctgaattaggtagaataatcaaga 20562069  T
Q  123 aattagctctaatgattctccattcatattggtaattgtgagtagggtcatg 174  Q
    ||||||   || ||| |||||| ||||||||||||||||||| |||| ||||    
T  20562068 aattagtagtattgactctccactcatattggtaattgtgagaagggccatg 20562017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 23 - 174
Target Start/End: Complemental strand, 20564476 - 20564325
Alignment:
Q  23 tcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaaac 122  Q
    |||||||||||||  ||||||||||||||||| |||||| ||| | | ||||| |||||||||| ||||||||| ||  |||||||||||||||||||      
T  20564476 tcatcaccatcattgtgtacctgtgggttagtgccaacacaaacctagttttctaccacctccgaattagtaatatctgaattaggtagaataatcaaga 20564377  T
Q  123 aattagctctaatgattctccattcatattggtaattgtgagtagggtcatg 174  Q
    ||||||   || ||| |||||| ||||||||||||||||||| |||| ||||    
T  20564376 aattagtagtattgactctccactcatattggtaattgtgagaagggccatg 20564325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 175
Target Start/End: Original strand, 13090200 - 13090351
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    |||||||||||||||  ||||||||||||||||| ||||||||||   | ||||| ||||||| |||||||||||| ||  |||||||||||||||||||    
T  13090200 catcatcaccatcattgtgtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaa 13090296  T
Q  121 acaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgg 175  Q
      |||||||  || ||| || ||| ||||||||| ||||||||| |||| |||||    
T  13090297 gaaattagcattattgactcaccactcatattgggaattgtgagaagggccatgg 13090351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 174
Target Start/End: Complemental strand, 20559860 - 20559709
Alignment:
Q  23 tcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaaac 122  Q
    |||||||||||||  |||| |||||||||||| |||||| ||| | | ||||| |||||||||| ||||||||| ||  |||||||||||||||||||      
T  20559860 tcatcaccatcattgtgtatctgtgggttagtgccaacacaaacctagttttctaccacctccgaattagtaatatctgaattaggtagaataatcaaga 20559761  T
Q  123 aattagctctaatgattctccattcatattggtaattgtgagtagggtcatg 174  Q
    ||||||   || ||| |||||| ||||||||||||||||||| |||| ||||    
T  20559760 aattagtagtattgactctccactcatattggtaattgtgagaagggccatg 20559709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 21 - 175
Target Start/End: Original strand, 9362350 - 9362501
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    |||||||||||||||  ||||||||||||||||| ||||||||||   | ||||| ||||||| |||||||||||| |   |||||||||||||||||||    
T  9362350 catcatcaccatcattgtgtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatttgaattaggtagaataatcaa 9362446  T
Q  121 acaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgg 175  Q
      |||||||  || ||| |||||| |||||||||  |||||||| |||| |||||    
T  9362447 gaaattagcattattgactctccactcatattggggattgtgagaagggccatgg 9362501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 175
Target Start/End: Complemental strand, 13096531 - 13096380
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    |||||||||||||||  |||||||||||||||||  |||||||||   | ||||| ||||||| |||||||||||| ||  |||||||||||||||||||    
T  13096531 catcatcaccatcattgtgtacctgtgggttagtgtcaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaa 13096435  T
Q  121 acaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgg 175  Q
      ||||||   || ||| |||||| |||| |||| ||||||||| |||| |||||    
T  13096434 gaaattagaattattgactctccactcatgttgggaattgtgagaagggccatgg 13096380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 3246906 - 3246968
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacct 83  Q
    |||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||    
T  3246906 catcatcaccatcatcttgtacctgtgggttagtacaaaaataaaacaaattttccaccacct 3246968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 20153598 - 20153465
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    |||||||||||||||  ||||||||| ||||||| ||||||||||  || ||||| ||||||||| |||||| ||| ||  |   |||||||||||||||    
T  20153598 catcatcaccatcattgtgtacctgtaggttagtgccaacataaacaaagttttctaccacctccagattaggaatatctga---aggtagaataatcaa 20153502  T
Q  121 acaattagctctaatgattctccattcatattggtaa 157  Q
      |||||||   | ||| |||||| ||||||||||||    
T  20153501 gaaattagcagcattgactctccactcatattggtaa 20153465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 21 - 285
Target Start/End: Complemental strand, 29582 - 29312
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||     
T  29582 catcattaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttctaccacctccggattagtaatgtccgaattaggtagaataatcat 29483  T
Q  121 acaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgaaaaagt------agtataaaagtttagataa 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||      |||||||||||||||||||    
T  29482 acaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtgagagtataaaagtttagataa 29383  T
Q  215 tagttctcatctatcctcttgatcccttgattcacactcacccgaaacttcttagcaataaaagtgatgat 285  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  29382 tagttctcatctatcctcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 29312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 21 - 285
Target Start/End: Complemental strand, 20001119 - 20000852
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  20001119 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccagattagtaatgtccgaattaggtagaataatcaa 20001020  T
Q  121 acaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgaaaaagt------agtataaaagtttagataa 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||      |||||||||||||||||||    
T  20001019 acaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtgagagtataaaagtttagataa 20000920  T
Q  215 tagttctcatctatcctcttgatcccttgattcacactcacccgaaacttcttagcaataaaagtgatgat 285  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||   |||||||||||||||||||||    
T  20000919 tagttctcatctatcctcttgatcccttgattcacactcaccccaaa---cttagcaataaaagtgatgat 20000852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 174
Target Start/End: Original strand, 20040462 - 20040615
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    |||||||||||||||  ||||||||||||||||| |||||||||| | | ||||| |||||||| ||||||||||| ||  |||||||||||||||||||    
T  20040462 catcatcaccatcattgtgtacctgtgggttagtgccaacataaacctagttttctaccacctctggattagtaatatctgaattaggtagaataatcaa 20040561  T
Q  121 acaattagctctaatgattctccattcatattggtaattgtgagtagggtcatg 174  Q
      ||||||   || ||| |||||| ||||||||||||||||||| |||| ||||    
T  20040562 gaaattagtagtattgactctccactcatattggtaattgtgagaagggccatg 20040615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 178
Target Start/End: Original strand, 21855169 - 21855323
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    |||||||||||||||  ||||||||| ||||||| ||||||||||   | ||||| ||||||| |||||||||||| ||  |||||||||||||||||||    
T  21855169 catcatcaccatcattgtgtacctgtaggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaa 21855265  T
Q  121 acaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggtt 178  Q
      |||||||  || ||| |||||| ||||||||||||||||||| ||||| |||||||    
T  21855266 gaaattagcattattgactctccactcatattggtaattgtgagaagggttatgggtt 21855323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 21 - 174
Target Start/End: Complemental strand, 17619562 - 17619412
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    |||||||||||||||  ||||||||||||||||| ||||||||||   | ||||| ||||||| |||||||||||| ||  |||||||||||||||||||    
T  17619562 catcatcaccatcattgtgtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaa 17619466  T
Q  121 acaattagctctaatgattctccattcatattggtaattgtgagtagggtcatg 174  Q
      |||||||  || ||| |||||| ||||||||| ||||||||| |||| ||||    
T  17619465 gaaattagcattattgactctccactcatattggaaattgtgagaagggccatg 17619412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 21 - 285
Target Start/End: Original strand, 51946 - 52216
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||    
T  51946 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggaatagtaatgtccgaattaggtagaatagtcaa 52045  T
Q  121 acaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgaaaaagt------agtataaaagtttagataa 214  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||      |||||| ||||||||||||    
T  52046 acaattagctctaataattctccattcatattggtaattgtgagtagggtcatgggttataaggaaggacaaagtagtaagagtatataagtttagataa 52145  T
Q  215 tagttctcatctatcctcttgatcccttgattcacactcacccgaaacttcttagcaataaaagtgatgat 285  Q
    ||||| || |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  52146 tagttttcctctatcctcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 52216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 21 - 285
Target Start/End: Original strand, 23712100 - 23712370
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  23712100 catcatcaccatcatcttgtacctgtgggttaggaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaa 23712199  T
Q  121 acaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgaaaaagt------agtataaaagtttagataa 214  Q
    | |||||| |||||| || ||||||||||||||||||||||||||| ||||||||||| ||||||| || |||||      |||||| |||||| |||||    
T  23712200 aaaattagttctaataatcctccattcatattggtaattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataa 23712299  T
Q  215 tagttctcatctatcctcttgatcccttgattcacactcacccgaaacttcttagcaataaaagtgatgat 285  Q
    || || ||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||    
T  23712300 taattttcatctatcctcttgatcccttgattcacactcaccctaaacctcttagcaacaaaagtgatgat 23712370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 21 - 169
Target Start/End: Original strand, 20446238 - 20446386
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    |||||||||||||||  ||||||||||||||||| |||||||||| ||| ||||| ||||||| |||||||||||| ||  |||||||||||||||||||    
T  20446238 catcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccaccttcggattagtaatatctgaattaggtagaataatcaa 20446337  T
Q  121 acaattagctctaatgattctccattcatattggtaattgtgagtaggg 169  Q
      |||||||  || ||| |||||| ||||||||||||||||||| ||||    
T  20446338 gaaattagcattattgactctccactcatattggtaattgtgagaaggg 20446386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 21 - 175
Target Start/End: Original strand, 21282303 - 21282458
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    |||||||||||||||  ||||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||| | | |||| ||||||||||||||    
T  21282303 catcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatattcgaatttggtagaataatcaa 21282402  T
Q  121 acaa-ttagctctaatgattctccattcatattggtaattgtgagtagggtcatgg 175  Q
     ||| |||||  || ||| |||||| ||||||||||||||||||| ||||| ||||    
T  21282403 gcaatttagcgttattgactctccactcatattggtaattgtgagaagggttatgg 21282458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 21 - 161
Target Start/End: Original strand, 18487456 - 18487596
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    |||||||||||||||  ||||||||||||||||| |||||||||| ||| ||||| |||||||| |||||| |||| ||  |||||||||||||||||||    
T  18487456 catcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccacctcaggattaataatatctgaattaggtagaataatcaa 18487555  T
Q  121 acaattagctctaatgattctccattcatattggtaattgt 161  Q
      |||||||  || ||| |||||| ||||||||||||||||    
T  18487556 gaaattagcattattgactctccactcatattggtaattgt 18487596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 164
Target Start/End: Original strand, 23602033 - 23602173
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    |||||||||||||||  ||||||||||||||||| ||||||||||   | ||||| ||||||| |||||||||||| ||  |||||||||||||||||||    
T  23602033 catcatcaccatcattgtgtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaa 23602129  T
Q  121 acaattagctctaatgattctccattcatattggtaattgtgag 164  Q
      |||||||  || ||| || ||| ||||||||| |||||||||    
T  23602130 gaaattagcattattgactcgccactcatattgggaattgtgag 23602173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 21 - 175
Target Start/End: Complemental strand, 24939351 - 24939200
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    |||||||||||||||  ||||||||||||||||| ||||||||||   | ||||| ||||||| || ||||||||| ||  |||||||||||||||||||    
T  24939351 catcatcaccatcattgtgtacctgtgggttagtgccaacataaa---agttttctaccaccttcgaattagtaatatctgaattaggtagaataatcaa 24939255  T
Q  121 acaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgg 175  Q
      |||||||  || ||| || ||| ||||||||| ||||||||| |||| |||||    
T  24939254 gaaattagcattattgactcgccactcatattgggaattgtgagaagggccatgg 24939200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 158
Target Start/End: Complemental strand, 24218650 - 24218516
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    |||||| ||||||||  ||||| ||||||||||| |||||||||    | ||||| |||| ||||||||||||||| ||  |||||||||||||||||||    
T  24218650 catcattaccatcattgtgtacatgtgggttagtgccaacataat---agttttctaccatctccggattagtaatatctgaattaggtagaataatcaa 24218554  T
Q  121 acaattagctctaatgattctccattcatattggtaat 158  Q
      |||||||  || ||| |||||| |||||||||||||    
T  24218553 gaaattagcattattgactctccactcatattggtaat 24218516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0485 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: scaffold0485
Description:

Target: scaffold0485; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 21 - 285
Target Start/End: Original strand, 11297 - 11568
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaatttt-ccaccacctccggattagtaatgtccaaattaggtagaataatca 119  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||  |||||||||||||||||    
T  11297 catcaccaccatcaccttgtacctgtgggttagtaccaacataaagcaaatttttccaccacctccagattagttatgtccggattaggtagaataatca 11396  T
Q  120 aacaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgaaaaagtag------tataaaagtttagata 213  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||| ||||||| || |||||||      |||| |||| ||||||    
T  11397 aacaattagctctaataattctccactcatattggtaattgtgagtatggtcatgggttctaaggaaggacaaagtagtgagattatataagtctagata 11496  T
Q  214 atagttctcatctatcctcttgatcccttgattcacactcacccgaaacttcttagcaataaaagtgatgat 285  Q
    ||||||| | |||||||||||||||||||||||||||||||||| ||||||  |||||||||| ||||||||    
T  11497 atagttcccctctatcctcttgatcccttgattcacactcaccccaaactttctagcaataaaggtgatgat 11568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 183
Target Start/End: Original strand, 25339499 - 25339661
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    ||||| |||||||||| ||||| |||| |||||| ||||||||||| |||||||||||||||||| ||||||| ||||||  ||||||||||||||||||    
T  25339499 catcaccaccatcatcatgtacatgtgagttagtgccaacataaagaaaattttccaccacctccagattagttatgtccggattaggtagaataatcaa 25339598  T
Q  121 acaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggttttaag 183  Q
    ||||||||| ||| |||   |||| |||||||||||||||||||| ||| |||| ||| ||||    
T  25339599 acaattagccctattgaccttccactcatattggtaattgtgagttgggccatgagttctaag 25339661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 38 - 175
Target Start/End: Complemental strand, 24501134 - 24500997
Alignment:
Q  38 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 137  Q
    ||||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||  || |||    
T  24501134 tgtacctgtgggttagtgccaacataaatcaagttttctaccacctccggattagtaatgtccgaattaggtagaataatcaagcaattagcattattga 24501035  T
Q  138 ttctccattcatattggtaattgtgagtagggtcatgg 175  Q
     |||||| | ||||||||||||||||| |||| |||||    
T  24501034 ctctccactaatattggtaattgtgagaagggccatgg 24500997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0566 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0566
Description:

Target: scaffold0566; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 21 - 174
Target Start/End: Complemental strand, 1428 - 1275
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    |||||||||||||||  ||||||||||||||||| |||||||||| ||| ||||| ||||||||| |||||||||| ||  |||||||||||||||||||    
T  1428 catcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccacctccagattagtaatatctgaattaggtagaataatcaa 1329  T
Q  121 acaattagctctaatgattctccattcatattggtaattgtgagtagggtcatg 174  Q
      |||||||   | ||| |||||| |||||||||||||||| || |||||||||    
T  1328 gaaattagcataattgactctccactcatattggtaattgttagaagggtcatg 1275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 38 - 161
Target Start/End: Complemental strand, 18632 - 18509
Alignment:
Q  38 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 137  Q
    ||||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||| ||  |||||||||||||||||||  |||||||  || |||    
T  18632 tgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatatctgaattaggtagaataatcaagaaattagcattattga 18533  T
Q  138 ttctccattcatattggtaattgt 161  Q
     |||||| ||||||||||||||||    
T  18532 ctctccactcatattggtaattgt 18509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 175
Target Start/End: Original strand, 11741 - 11860
Alignment:
Q  56 ccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatgattctccattcatattggt 155  Q
    |||||||||| ||| ||||| ||||||||| |||||||||| ||| ||||||||||||||||||| ||||||||  || ||| |||||| ||||||||||    
T  11741 ccaacataaaccaagttttctaccacctccagattagtaatatccgaattaggtagaataatcaagcaattagcattattgactctccactcatattggt 11840  T
Q  156 aattgtgagtagggtcatgg 175  Q
    ||||||||| ||||||||||    
T  11841 aattgtgagaagggtcatgg 11860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 71 - 175
Target Start/End: Complemental strand, 17138 - 17034
Alignment:
Q  71 ttttccaccacctccggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaattgtgagtagggt 170  Q
    ||||| |||||||| | ||||||||| ||| ||||||||||||||||||| ||||||||  || ||| |||||| ||||||||||||||||||| |||||    
T  17138 ttttctaccacctctgtattagtaatatccgaattaggtagaataatcaagcaattagcattattgactctccactcatattggtaattgtgagaagggt 17039  T
Q  171 catgg 175  Q
    |||||    
T  17038 catgg 17034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 175
Target Start/End: Original strand, 38026 - 38177
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    |||||||||||||||  ||||||||||||||||| |||||||||   || ||||| |||||||  | ||||||||| ||  |||||||||||||||||||    
T  38026 catcatcaccatcattgtgtacctgtgggttagtgccaacataa---aagttttctaccaccttagaattagtaatatctgaattaggtagaataatcaa 38122  T
Q  121 acaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgg 175  Q
      |||||||  || ||| || ||| ||||||||| ||||||||| |||| |||||    
T  38123 gaaattagcattattgactcgccactcatattggaaattgtgagaagggccatgg 38177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 164
Target Start/End: Original strand, 12837 - 12977
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    |||||||||||||||  ||||||||||||||||| |||||||||   || ||||| ||||||||| |||||||||| || || |||||||||||||| |     
T  12837 catcatcaccatcattatgtacctgtgggttagtgccaacataa---aagttttctaccacctccagattagtaatatctaatttaggtagaataataag 12933  T
Q  121 acaattagctctaatgattctccattcatattggtaattgtgag 164  Q
      |||||||  || ||| |||| | |||||||||||| ||||||    
T  12934 gaaattagcattattgactctctactcatattggtaactgtgag 12977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 164
Target Start/End: Original strand, 8728 - 8868
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccaaattaggtagaataatcaa 120  Q
    |||||||||||||||  ||||| ||||||||||| |||||||||   || ||||| ||||||||| |||||||||| || || |||||||||||||| |     
T  8728 catcatcaccatcattgtgtacatgtgggttagtgccaacataa---aagttttctaccacctccagattagtaatatctaatttaggtagaataataag 8824  T
Q  121 acaattagctctaatgattctccattcatattggtaattgtgag 164  Q
      |||||||  || ||| |||| | |||||||||||| ||||||    
T  8825 gaaattagcattattgactctctactcatattggtaactgtgag 8868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 8665 - 8709
Alignment:
Q  21 catcatcaccatcatcttgtacctgtgggttagtaccaacataaa 65  Q
    |||||||||||||||  |||| |||||||||||| ||||||||||    
T  8665 catcatcaccatcattgtgtatctgtgggttagtgccaacataaa 8709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1184 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1184
Description:

Target: scaffold1184; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 79
Target Start/End: Original strand, 537 - 571
Alignment:
Q  45 gtgggttagtaccaacataaagcaaattttccacc 79  Q
    |||||||||||||||||||||||||||||||||||    
T  537 gtgggttagtaccaacataaagcaaattttccacc 571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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