View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20681_high_6 (Length: 315)
Name: NF20681_high_6
Description: NF20681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20681_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 288
Target Start/End: Original strand, 10913686 - 10913962
Alignment:
| Q |
11 |
cacagacgcctgcaaatcaaaggcgtgaaatgccttttactgataggaactaaagattctgaacttccaatcatgtatannnnnnnnnnaattctgaatt |
110 |
Q |
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| T |
10913686 |
cacagacgcctgcaaatcaaaggcgtgaaatgccttttactgataggaactaaagattctgaacttccaatcatgtatattttttttt-aattctaaatt |
10913784 |
T |
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| Q |
111 |
gattggacaaagttccttagccttgagtcttatcaaatttatagagaatggcatgaatgtaaaataaataaaaaagtttcatcccaccatgcaatacata |
210 |
Q |
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| T |
10913785 |
gattggacaaagttccttagccttgagtcttatcaaatttatagagaatggcatgaatgtaaaataaataaaaaggtttcaaccccccatgcaatacata |
10913884 |
T |
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| Q |
211 |
aaaagtgcagaggtaatatgtaaggtatgtaaagagaatcatacagaaacaatgtgttttacaaccaatatatccctg |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10913885 |
aaaagtgcagaggtaatatgtaaggtatgtaaagagaatcatacagaaacaatgtgttttacaaccaatatatccctg |
10913962 |
T |
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