View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20681_low_1 (Length: 443)
Name: NF20681_low_1
Description: NF20681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20681_low_1 |
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| [»] scaffold0077 (1 HSPs) |
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Alignment Details
Target: scaffold0077 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: scaffold0077
Description:
Target: scaffold0077; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 17 - 420
Target Start/End: Complemental strand, 10945 - 10542
Alignment:
| Q |
17 |
agaaaatatattctaatggaaaatatcattttgctttattccttcctaatataaatattctctcaaaaagataaaaaataacatgtagaagtacaagtca |
116 |
Q |
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| T |
10945 |
agaaaatatattctaatggaaaatatcattttgctttattccttcctaatataaatattctctcaaaaagataaaaaataacatgtagaagtacaagtca |
10846 |
T |
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| Q |
117 |
actgtaacaagcatagactcttgcaactttaaatacagcaacatttcacatattctttctccacaaaaacattcttgaaacaccatggtcgacataataa |
216 |
Q |
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| T |
10845 |
actgtaacaagcatagactcttgcaactttaaatacagcaacatttcacatattctttctccacaaaaacattcttgaaacaccatggtcgacataataa |
10746 |
T |
|
| Q |
217 |
ctcgagaatcttcaaagcgcagagcgaaccgtttcatcatcaacgtaacaacgttgatgacggtgatggtgaagcgagcgacgttgaagctgaaggcagc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
10745 |
ctcgagaatcttcaaagcgcagagcgaaccgtttcatcatcaacgtaacaacgttgatgacggtgatggtgaagcgagcgacgttgaagctgaaggcggc |
10646 |
T |
|
| Q |
317 |
cccgatgacgagtgaggtaaagtcacctaagaagttgctgaaaaacataagcaacaaagctatgccgtttattgagaagatgaagaagaaaaagaaaggg |
416 |
Q |
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| T |
10645 |
cccgatgacgagtgaggtaaagtcacctaagaagttgctgaaaaacataagcaacaaagctatgccgtttattgagaagatgaagaagaaaaagaaaggg |
10546 |
T |
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| Q |
417 |
aagt |
420 |
Q |
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|||| |
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| T |
10545 |
aagt |
10542 |
T |
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