View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20682_low_3 (Length: 496)

Name: NF20682_low_3
Description: NF20682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20682_low_3
NF20682_low_3
[»] chr5 (7 HSPs)
chr5 (20-479)||(6611639-6612097)
chr5 (164-256)||(8249076-8249168)
chr5 (164-256)||(4926210-4926301)
chr5 (164-256)||(42457106-42457198)
chr5 (368-410)||(18967458-18967500)
chr5 (164-277)||(17972440-17972553)
chr5 (54-106)||(20709538-20709590)
[»] chr6 (6 HSPs)
chr6 (181-479)||(24638596-24638901)
chr6 (162-259)||(10303767-10303863)
chr6 (164-259)||(19153932-19154027)
chr6 (354-406)||(10303617-10303669)
chr6 (413-445)||(15820162-15820194)
chr6 (171-247)||(17293345-17293421)
[»] chr4 (7 HSPs)
chr4 (299-449)||(5634385-5634541)
chr4 (164-256)||(40434545-40434637)
chr4 (164-256)||(5634257-5634349)
chr4 (51-106)||(3018337-3018392)
chr4 (54-106)||(36887679-36887731)
chr4 (124-162)||(36887750-36887788)
chr4 (54-107)||(31944276-31944329)
[»] chr7 (3 HSPs)
chr7 (162-407)||(10274879-10275123)
chr7 (164-333)||(40682104-40682273)
chr7 (54-111)||(31852152-31852209)
[»] chr2 (9 HSPs)
chr2 (355-410)||(9583859-9583914)
chr2 (307-479)||(32151117-32151295)
chr2 (296-410)||(13880263-13880377)
chr2 (296-410)||(14020388-14020502)
chr2 (124-162)||(30958753-30958791)
chr2 (164-240)||(9584030-9584106)
chr2 (53-106)||(26236125-26236178)
chr2 (53-106)||(26560554-26560607)
chr2 (74-106)||(26136144-26136176)
[»] chr1 (7 HSPs)
chr1 (299-410)||(3927040-3927151)
chr1 (299-410)||(27100065-27100176)
chr1 (354-410)||(9484436-9484492)
chr1 (164-325)||(44889608-44889769)
chr1 (368-410)||(22583642-22583684)
chr1 (170-247)||(48611362-48611439)
chr1 (129-161)||(21091860-21091892)
[»] chr3 (4 HSPs)
chr3 (124-161)||(3424845-3424882)
chr3 (52-106)||(36990986-36991040)
chr3 (52-106)||(37016426-37016480)
chr3 (53-106)||(15328788-15328841)
[»] chr8 (1 HSPs)
chr8 (53-106)||(14767504-14767557)


Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 20 - 479
Target Start/End: Original strand, 6611639 - 6612097
Alignment:
Q  20 ttacataccctctatttttggata---cactaaaaatagggttaatatttcttttgatccttgtaatattaacgaattttggttttagtctttgtnnnnn 116  Q
    |||||||||||||||||||||||    ||||||||||||| ||||||||||||||||||| | |||||||| | |||||| |||||||||| |||         
T  6611639 ttacataccctctatttttggatgatgcactaaaaatagg-ttaatatttcttttgatccctataatattagcaaatttttgttttagtctctgtaaaaa 6611737  T
Q  117 nnnnnnntagatttcatcactatcatttgagattcttccacttttgtgtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaac 216  Q
           ||||||||| || |||||||||||||||||||||||||| ||||  | |||||||||||||||||| |||||||||||| |||||||||||||    
T  6611738 aaaa---tagatttcaacattatcatttgagattcttccacttttgggtggaggcggaggcggaggttgtttgtgtgggaagatgagcagttgggggaac 6611834  T
Q  217 tatgtttattactccaaactgtgattttgcacgttgacaaggacaacagatgattatggaatctnnnnnnntctaatgatttctctgttcgtagtgctta 316  Q
    ||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||       |||||||||||||||||||||||||||||    
T  6611835 tatgtttattacttcaaactgtgattttgcaggttgacaaggacgacagatgattatggaatctagaaaaatctaatgatttctctgttcgtagtgctta 6611934  T
Q  317 caattttcagactgctcgggtcattgttgacgctccagtggatgtgaagttgctttggcataaggatatccctatgaaggttgtggtttttgctccgttt 416  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  6611935 caattttcagactgctcaggtcattgttgacgctccggtggatgtgaagttgctttgacataaggatatccctctgaaggttgtggtttttgctccgttt 6612034  T
Q  417 cggaatagattgccaacaaaagataacttgcttctgtgtggagttataactaatgattcttgt 479  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  6612035 cggaatagattgccaacaaaagataacttgcttctacgtggagttataactaatgattcttgt 6612097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 164 - 256
Target Start/End: Complemental strand, 8249168 - 8249076
Alignment:
Q  164 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaa 256  Q
    |||| |||||||||||||||||||||| |||||||| || ||||||||||||  ||||||||| || |||| |||||||||||| ||||||||    
T  8249168 gtggaagtggaggcggaggttgtttgcatgggaagaggagcagttgggggaaaaatgtttattgcttcaaaatgtgattttgcaggttgacaa 8249076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 164 - 256
Target Start/End: Original strand, 4926210 - 4926301
Alignment:
Q  164 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaa 256  Q
    |||| |||||||||||||||||||||| ||||| || || ||||||||| ||||||||||| |||| |||| |||||||||||| ||||||||    
T  4926210 gtggaagtggaggcggaggttgtttgcatgggaggaggagcagttgggg-aactatgtttactacttcaaagtgtgattttgcaagttgacaa 4926301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 164 - 256
Target Start/End: Original strand, 42457106 - 42457198
Alignment:
Q  164 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaa 256  Q
    |||| |||||||||||||||||||||||||||| || || ||| |||||||| |||||||||| || |||| ||||| |||||| ||||||||    
T  42457106 gtggaagtggaggcggaggttgtttgcgtgggaggaggagcaggtgggggaattatgtttattgcttcaaaatgtgactttgcaagttgacaa 42457198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 368 - 410
Target Start/End: Original strand, 18967458 - 18967500
Alignment:
Q  368 gctttggcataaggatatccctatgaaggttgtggtttttgct 410  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  18967458 gctttggcataaggatatccctatgaaggttgtgctttttgct 18967500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 164 - 277
Target Start/End: Complemental strand, 17972553 - 17972440
Alignment:
Q  164 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaaggacaac 263  Q
    |||| |||||||||| ||||||||||| |||||||| || ||| ||| |||| ||||| |||| || |||| |||||||||||| | |||||| ||  ||    
T  17972553 gtggaagtggaggcgaaggttgtttgcatgggaagaggagcagatggaggaattatgtctattgcttcaaaatgtgattttgcaggctgacaaagaggac 17972454  T
Q  264 agatgattatggaa 277  Q
    |||||  |||||||    
T  17972453 agatggatatggaa 17972440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 20709590 - 20709538
Alignment:
Q  54 agggttaatatttcttttgatccttgtaatattaacgaattttggttttagtc 106  Q
    ||||||||||  ||||||  ||| |||||||||||||||||||||||||||||    
T  20709590 agggttaatacctcttttcgtccatgtaatattaacgaattttggttttagtc 20709538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 134; Significance: 2e-69; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 181 - 479
Target Start/End: Original strand, 24638596 - 24638901
Alignment:
Q  181 ggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaaggacaacagatgattatggaatct 280  Q
    ||||| ||||||||||||| ||  |||| |||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||  ||| |||| |    
T  24638596 ggttgcttgcgtgggaagaggagaagttaggggaactatgtttattacttcaaactgtgattttgcaggttgacaaggacgacagatggctattgaatat 24638695  T
Q  281 nnnnnnntctaatgatttctctgttcgtagtgcttacaatttt-cagactgctcgggtcattgttgacgctccagtggatgtgaagttgctttggcataa 379  Q
           ||||||| ||||||  ||||||||| |||||||||| |||| ||||| | | |||||||||||||| |||||||||||| ||||||| |||||    
T  24638696 gaaaaaatctaatgctttctcctttcgtagtgtttacaatttttcagattgctcagcttattgttgacgctccggtggatgtgaagctgctttgacataa 24638795  T
Q  380 ggatatccctatgaaggttgtggtttttgc------tccgtttcggaatagattgccaacaaaagataacttgcttctgtgtggagttataactaatgat 473  Q
    |||||||||| |||||||||||||||||||      ||  |||| |||||||||| ||||||||||||||||||||| | ||||||||||||||||||||    
T  24638796 ggatatccctctgaaggttgtggtttttgcttggcgtctatttcagaatagattgtcaacaaaagataacttgcttcggcgtggagttataactaatgat 24638895  T
Q  474 tcttgt 479  Q
    ||||||    
T  24638896 tcttgt 24638901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 162 - 259
Target Start/End: Complemental strand, 10303863 - 10303767
Alignment:
Q  162 gtgtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaagga 259  Q
    |||||| ||||||||||||||||||||| || | |||| || ||| ||||||||||  | |||||| |||||||||||| |||||| |||||||||||    
T  10303863 gtgtggaagtggaggcggaggttgtttgtgttg-aagaggagcaggtgggggaacttagattattagtccaaactgtgactttgcaggttgacaagga 10303767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 259
Target Start/End: Complemental strand, 19154027 - 19153932
Alignment:
Q  164 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaagga 259  Q
    |||| |||||||||| ||||||||||| |||||||| ||  || |||| ||||| |||||||||||  ||| ||||| ||| || ||| |||||||    
T  19154027 gtggaagtggaggcgaaggttgtttgcttgggaagaggataaggtgggagaactttgtttattacttgaaaatgtgaatttacaggttaacaagga 19153932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 406
Target Start/End: Complemental strand, 10303669 - 10303617
Alignment:
Q  354 gtggatgtgaagttgctttggcataaggatatccctatgaaggttgtggtttt 406  Q
    ||||||||  |||||||||||||||||||| ||||| |||| |||||| ||||    
T  10303669 gtggatgttgagttgctttggcataaggatgtccctttgaatgttgtgatttt 10303617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 413 - 445
Target Start/End: Complemental strand, 15820194 - 15820162
Alignment:
Q  413 gtttcggaatagattgccaacaaaagataactt 445  Q
    ||||||||||||||| |||||||||||||||||    
T  15820194 gtttcggaatagattaccaacaaaagataactt 15820162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 247
Target Start/End: Complemental strand, 17293421 - 17293345
Alignment:
Q  171 tggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgca 247  Q
    |||||| |||||||||||||||||||||| ||   | ||||||||||  | |||||||| |||| ||||| ||||||    
T  17293421 tggaggtggaggttgtttgcgtgggaagaagagttggtgggggaacttaggttattacttcaaaatgtgactttgca 17293345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 299 - 449
Target Start/End: Original strand, 5634385 - 5634541
Alignment:
Q  299 ctctgttcgtagtgcttacaattttcagactgctcgggtcattgttgacgctccagtggatgtgaagttgctttggcataaggatatccctatgaaggtt 398  Q
    |||||||||||||||||||||||| |||||| ||| |   ||||||||| |||| ||||||||||||| ||| ||||| |||||||||||| ||||||||    
T  5634385 ctctgttcgtagtgcttacaatttccagactactcagcagattgttgacactcctgtggatgtgaagtcgctatggcaaaaggatatccctttgaaggtt 5634484  T
Q  399 gtggtttttgct------ccgtttcggaatagattgccaacaaaagataacttgctt 449  Q
    ||| |||| |||        |||||||||||||||||| || ||||||||| |||||    
T  5634485 gtgattttcgcttggcgattgtttcggaatagattgccgaccaaagataacctgctt 5634541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 164 - 256
Target Start/End: Original strand, 40434545 - 40434637
Alignment:
Q  164 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaa 256  Q
    |||| ||||||||||||||||||||||||||||||| ||  ||||||||||| |||||||||| || |||| | |||||||||| ||||||||    
T  40434545 gtggaagtggaggcggaggttgtttgcgtgggaagaggagtagttgggggaattatgtttattgcttcaaaatatgattttgcaggttgacaa 40434637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 164 - 256
Target Start/End: Original strand, 5634257 - 5634349
Alignment:
Q  164 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaa 256  Q
    |||| |||||||||||||| |||||| ||||||||| ||  || |||||||||||||||||||||| || | ||||| |||||| ||||||||    
T  5634257 gtggaagtggaggcggaggctgtttgtgtgggaagaggagaaggtgggggaactatgtttattacttcacaatgtgactttgcatgttgacaa 5634349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 51 - 106
Target Start/End: Complemental strand, 3018392 - 3018337
Alignment:
Q  51 aatagggttaatatttcttttgatccttgtaatattaacgaattttggttttagtc 106  Q
    |||||||||||||| ||||||  ||| |||||||||||||||||| ||||||||||    
T  3018392 aatagggttaatatctcttttcgtccctgtaatattaacgaatttcggttttagtc 3018337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 36887679 - 36887731
Alignment:
Q  54 agggttaatatttcttttgatccttgtaatattaacgaattttggttttagtc 106  Q
    ||||||||||  ||||||| ||| |||||||||| ||||||||||||||||||    
T  36887679 agggttaatacctcttttggtccctgtaatattagcgaattttggttttagtc 36887731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 162
Target Start/End: Original strand, 36887750 - 36887788
Alignment:
Q  124 tagatttcatcactatcatttgagattcttccacttttg 162  Q
    |||||| |||| |||||||||||||||||||||||||||    
T  36887750 tagattccatccctatcatttgagattcttccacttttg 36887788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 31944329 - 31944276
Alignment:
Q  54 agggttaatatttcttttgatccttgtaatattaacgaattttggttttagtct 107  Q
    ||||| |||| |||||||  |||||||||||||| ||||||| |||||||||||    
T  31944329 agggtaaatacttcttttcgtccttgtaatattagcgaatttcggttttagtct 31944276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 162 - 407
Target Start/End: Original strand, 10274879 - 10275123
Alignment:
Q  162 gtgtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaaggaca 261  Q
    |||||| |||||||||| ||||||||||||||||| || ||   | ||||||||||  | ||||||||||||||||||| |||| | ||  |||||||      
T  10274879 gtgtggaagtggaggcgaaggttgtttgcgtgggaggaggaggtggtgggggaacttaggttattactccaaactgtgactttggaggtgaacaaggagg 10274978  T
Q  262 acagatgattatggaatctnnnnnnntctaatgatttctctgttcgtagtgcttacaattttcagactgctcgggtcattgttgacgctccagtggatgt 361  Q
    |||  ||  | |||||| |       ||||||| ||| ||||||||||||||||| | |||||  ||||||| |   |||||| || ||| |||||||||    
T  10274979 acatgtggctttggaatttggaaacatctaatgctttttctgttcgtagtgcttatatttttctaactgctcagcctattgtt-acactctagtggatgt 10275077  T
Q  362 gaagttgctttggcataaggatatccctatgaaggttgtggttttt 407  Q
    |||||| ||||||||||| ||| ||||| ||||||||||| |||||    
T  10275078 gaagttactttggcataaagatgtccctttgaaggttgtgattttt 10275123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 333
Target Start/End: Original strand, 40682104 - 40682273
Alignment:
Q  164 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaaggacaac 263  Q
    |||| |||||||| ||||||||||||| ||||| || ||  || |||||||||| ||||||||||| |||| ||| | |||||| ||||| |||||  ||    
T  40682104 gtggaagtggaggaggaggttgtttgcatgggaggaggagaaggtgggggaactttgtttattacttcaaaatgtaactttgcaggttgaaaaggaggac 40682203  T
Q  264 agatgattatggaatctnnnnnnntctaatgatttctctgttcgtagtgcttacaattttcagactgctc 333  Q
    | |||  | || ||| |       |||||||  ||||||||||||||||||||| |||||| | ||||||    
T  40682204 atatggctttgaaatttggaaaaatctaatgtgttctctgttcgtagtgcttacgattttctgtctgctc 40682273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 31852209 - 31852152
Alignment:
Q  54 agggttaatatttcttttgatccttgtaatattaacgaattttggttttagtctttgt 111  Q
    ||||||||||  ||||||  ||| |||||||||||||||||| |||||||||| ||||    
T  31852209 agggttaatacctcttttcgtccctgtaatattaacgaatttcggttttagtcattgt 31852152  T

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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 355 - 410
Target Start/End: Complemental strand, 9583914 - 9583859
Alignment:
Q  355 tggatgtgaagttgctttggcataaggatatccctatgaaggttgtggtttttgct 410  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9583914 tggatgtgaagtttctttggcataaggatatccctatgaaggttgtggtttttgct 9583859  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 307 - 479
Target Start/End: Original strand, 32151117 - 32151295
Alignment:
Q  307 gtagtgcttacaattttcagactgctcgggtcattgttgacgctccagtggatgtgaagttgctttggcataaggatatccctatgaaggttgtggtttt 406  Q
    ||||||||||||||||| ||| |||||     | |||||||||||  |||||||||||| |||||||||| |||||||||||| |||| || ||||||||    
T  32151117 gtagtgcttacaatttttagattgctcaacatagtgttgacgctcgtgtggatgtgaagctgctttggcaaaaggatatccctctgaatgtcgtggtttt 32151216  T
Q  407 tgc------tccgtttcggaatagattgccaacaaaagataacttgcttctgtgtggagttataactaatgattcttgt 479  Q
     ||      || ||| |  |||||||| ||||||||||||||||| |||| | |||||||| | | |||||||| ||||    
T  32151217 cgctttgcgtctgttacataatagattaccaacaaaagataacttacttcggcgtggagttctcaataatgatttttgt 32151295  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 410
Target Start/End: Original strand, 13880263 - 13880377
Alignment:
Q  296 tttctctgttcgtagtgcttacaattttcagactgctcgggtcattgttgacgctccagtggatgtgaagttgctttggcataaggatatccctatgaag 395  Q
    ||||||||||||||||||||| ||||||| ||| |||| |   | | ||| |  ||| ||||||| |||||| ||||||||||||||| ||| |||||||    
T  13880263 tttctctgttcgtagtgcttataattttctgacagctcagcctacttttgtcaatccggtggatgcgaagttactttggcataaggatgtccttatgaag 13880362  T
Q  396 gttgtggtttttgct 410  Q
    |||||| ||||||||    
T  13880363 gttgtgatttttgct 13880377  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 410
Target Start/End: Original strand, 14020388 - 14020502
Alignment:
Q  296 tttctctgttcgtagtgcttacaattttcagactgctcgggtcattgttgacgctccagtggatgtgaagttgctttggcataaggatatccctatgaag 395  Q
    ||||||||||||||||||||| ||||||| ||| |||| |   | | ||| |  ||| ||||||| |||||| ||||||||||||||| ||| |||||||    
T  14020388 tttctctgttcgtagtgcttataattttctgacagctcagcctacttttgtcaatccggtggatgcgaagttactttggcataaggatgtccttatgaag 14020487  T
Q  396 gttgtggtttttgct 410  Q
    |||||| ||||||||    
T  14020488 gttgtgatttttgct 14020502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 162
Target Start/End: Original strand, 30958753 - 30958791
Alignment:
Q  124 tagatttcatcactatcatttgagattcttccacttttg 162  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  30958753 tagatttcatccctatcatttgagattcttccacttttg 30958791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 164 - 240
Target Start/End: Complemental strand, 9584106 - 9584030
Alignment:
Q  164 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtga 240  Q
    |||| |||||||||||||||||||||||||||| || || ||| ||| |||  |||||||||| || |||| |||||    
T  9584106 gtggaagtggaggcggaggttgtttgcgtgggaggaggagcaggtggtggatttatgtttattgcttcaaaatgtga 9584030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 26236125 - 26236178
Alignment:
Q  53 tagggttaatatttcttttgatccttgtaatattaacgaattttggttttagtc 106  Q
    |||||| ||||| ||||||  |||||||||||||| |||||| |||||||||||    
T  26236125 tagggtaaatatctcttttcgtccttgtaatattagcgaattctggttttagtc 26236178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 26560554 - 26560607
Alignment:
Q  53 tagggttaatatttcttttgatccttgtaatattaacgaattttggttttagtc 106  Q
    |||||||||||| ||||||  ||| |||||||||||||||||| | ||||||||    
T  26560554 tagggttaatatctcttttcgtccctgtaatattaacgaatttcgattttagtc 26560607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 74 - 106
Target Start/End: Complemental strand, 26136176 - 26136144
Alignment:
Q  74 tccttgtaatattaacgaattttggttttagtc 106  Q
    |||||||||||||||||||||| ||||||||||    
T  26136176 tccttgtaatattaacgaatttcggttttagtc 26136144  T

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Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 299 - 410
Target Start/End: Complemental strand, 3927151 - 3927040
Alignment:
Q  299 ctctgttcgtagtgcttacaattttcagactgctcgggtcattgttgacgctccagtggatgtgaagttgctttggcataaggatatccctatgaaggtt 398  Q
    |||||||||||||||||||||||||| ||||  ||||    | ||||||| ||  ||||||| |||||  || |||||||||||||||||| ||||||||    
T  3927151 ctctgttcgtagtgcttacaattttctgacttatcggcctttagttgacggtcaggtggatgcgaagtctctatggcataaggatatccctctgaaggtt 3927052  T
Q  399 gtggtttttgct 410  Q
    ||||||||||||    
T  3927051 gtggtttttgct 3927040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 299 - 410
Target Start/End: Complemental strand, 27100176 - 27100065
Alignment:
Q  299 ctctgttcgtagtgcttacaattttcagactgctcgggtcattgttgacgctccagtggatgtgaagttgctttggcataaggatatccctatgaaggtt 398  Q
    |||||||||||||||||| ||||||| |||  ||  |   || ||||||| ||  |||||||||||||  ||||||||||||||||||||| ||||||||    
T  27100176 ctctgttcgtagtgcttataattttctgacatcttagcctatagttgacgttctggtggatgtgaagtctctttggcataaggatatccctctgaaggtt 27100077  T
Q  399 gtggtttttgct 410  Q
    || |||||||||    
T  27100076 gtagtttttgct 27100065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 410
Target Start/End: Original strand, 9484436 - 9484492
Alignment:
Q  354 gtggatgtgaagttgctttggcataaggatatccctatgaaggttgtggtttttgct 410  Q
    |||| |||| ||| ||||| |||||||||||||||| ||||||||||| ||||||||    
T  9484436 gtggttgtgcagtcgcttttgcataaggatatccctctgaaggttgtgctttttgct 9484492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 164 - 325
Target Start/End: Complemental strand, 44889769 - 44889608
Alignment:
Q  164 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaaggacaac 263  Q
    |||| ||||||||| |||||| |||| ||||||||| ||  || | |||||||| ||||||||||| |||| ||| | |||||| ||||||| |||  |     
T  44889769 gtggaagtggaggcagaggttatttgtgtgggaagaggagaaggtaggggaactttgtttattacttcaaaatgtaactttgcaggttgacagggaggat 44889670  T
Q  264 agatgattatggaatctnnnnnnntctaatgatttctctgttcgtagtgcttacaattttca 325  Q
    |||||  | |||||| |       ||| |||  | |||||||||||||||||||||||||||    
T  44889669 agatggctttggaatttggaaaaatcttatgcatactctgttcgtagtgcttacaattttca 44889608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 410
Target Start/End: Complemental strand, 22583684 - 22583642
Alignment:
Q  368 gctttggcataaggatatccctatgaaggttgtggtttttgct 410  Q
    |||||||||||||||||| ||| ||||||||||| ||||||||    
T  22583684 gctttggcataaggatattcctctgaaggttgtgctttttgct 22583642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 48611439 - 48611362
Alignment:
Q  170 gtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgca 247  Q
    |||||||||||||||||| |||||||| || || | | |||  ||||| ||||||||||| |||| ||||| ||||||    
T  48611439 gtggaggcggaggttgttcgcgtgggaggaggatctggtggaagaactttgtttattacttcaaaatgtgactttgca 48611362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 21091860 - 21091892
Alignment:
Q  129 ttcatcactatcatttgagattcttccactttt 161  Q
    |||||| ||||||||||||||||||||||||||    
T  21091860 ttcatccctatcatttgagattcttccactttt 21091892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 3424845 - 3424882
Alignment:
Q  124 tagatttcatcactatcatttgagattcttccactttt 161  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  3424845 tagatttcatccctatcatttgagattcttccactttt 3424882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 36991040 - 36990986
Alignment:
Q  52 atagggttaatatttcttttgatccttgtaatattaacgaattttggttttagtc 106  Q
    |||||||||||| | |||||| ||| |||||||||| ||||||| ||||||||||    
T  36991040 atagggttaatactacttttggtccctgtaatattagcgaatttcggttttagtc 36990986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 37016480 - 37016426
Alignment:
Q  52 atagggttaatatttcttttgatccttgtaatattaacgaattttggttttagtc 106  Q
    |||||||||||| | |||||| ||| |||||||||| ||||||| ||||||||||    
T  37016480 atagggttaatactacttttggtccctgtaatattagcgaatttcggttttagtc 37016426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 15328841 - 15328788
Alignment:
Q  53 tagggttaatatttcttttgatccttgtaatattaacgaattttggttttagtc 106  Q
    |||||||||||  |||||| |||  |||||||||| ||||||||||||||||||    
T  15328841 tagggttaatacctcttttcatctctgtaatattagcgaattttggttttagtc 15328788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 14767504 - 14767557
Alignment:
Q  53 tagggttaatatttcttttgatccttgtaatattaacgaattttggttttagtc 106  Q
    |||||||||||  |||||| |||  |||||||||| ||||||||||||||||||    
T  14767504 tagggttaatacctcttttcatctctgtaatattagcgaattttggttttagtc 14767557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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