View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20683_high_4 (Length: 354)
Name: NF20683_high_4
Description: NF20683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20683_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 119 - 345
Target Start/End: Complemental strand, 31043249 - 31043023
Alignment:
| Q |
119 |
cataagcttaagctatatagatttgcagatcttataactttatactcgggatcacttttatatgcataaattaatttgttttaaaaatgatgtcttgtga |
218 |
Q |
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| T |
31043249 |
cataagcttaagctatatagatttgcagatcttataactttatactcgggatcactcttatatgcataaattaatttgttttaaaaatgatgtcttgtga |
31043150 |
T |
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| Q |
219 |
cataatttaatcnnnnnnnttacacttgtcaaaataataaaactatctttgatggatatagaagtcacaatcaaagatatttgtagcatcagatctacat |
318 |
Q |
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| T |
31043149 |
cataatttaatcaaaaaaattacacttgtcaaaataataaaactatctttgatggatatagaagtcacaatcaaagatatttgtagcatcagatctacat |
31043050 |
T |
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| Q |
319 |
catatgcactgatacggcatctaattg |
345 |
Q |
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| T |
31043049 |
catatgcactgatacggcatctaattg |
31043023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 31043275 - 31043181
Alignment:
| Q |
29 |
aggaagttctggatcaccaaaaacaccataagcttaagttatatagatttgcagatcttataactttatactcaggatcactcttatatgcataa |
123 |
Q |
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| T |
31043275 |
aggaagttctggatcaccaaaaacaccataagcttaagctatatagatttgcagatcttataactttatactcgggatcactcttatatgcataa |
31043181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 273 - 345
Target Start/End: Complemental strand, 31046192 - 31046120
Alignment:
| Q |
273 |
gatatagaagtcacaatcaaagatatttgtagcatcagatctacatcatatgcactgatacggcatctaattg |
345 |
Q |
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| T |
31046192 |
gatatagaagtcacaatcaaagatatttgtagcatcagatctacaacatatgcactgatgcggcatataattg |
31046120 |
T |
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