View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20683_low_1 (Length: 474)
Name: NF20683_low_1
Description: NF20683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20683_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 16 - 467
Target Start/End: Original strand, 10193979 - 10194430
Alignment:
| Q |
16 |
aaaattaagacaaacaatgtcaacatgatggattctcattgttcaaatggaagccctaaaagtgaggtccaagactcaaagttcaagcacaaacatgtgt |
115 |
Q |
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| T |
10193979 |
aaaattaagacaaacaatgtcaacatgatggattctcattgttcaaatggaagccctaaaagtgaggtccaagactcaaagttcaagcacaaacatgtgt |
10194078 |
T |
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| Q |
116 |
ctaagaaaaggtatattggattaaattacaaaattattgtttccttttgaacttagtggtgaatttccaaggttcacgatctcataattttcattattct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
10194079 |
ctaagaaaaggtatattggattaaattacaaaattattgtttccttttgaacttagtggtgaattttcaaggttcactatctcataattttcattattct |
10194178 |
T |
|
| Q |
216 |
ttggaattttgtggtgcagaaaaaccgtgcctaagtggacagagcaagtgaaggtttattctggaacagcagctgaagggtctgtggaggatggtcatag |
315 |
Q |
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| T |
10194179 |
ttggaattttgtggtgcagaaaaaccgtgcctaagtggacagagcaagtgaaggtttattctggaacagcagctgaagggtctgtggaggatggtcatag |
10194278 |
T |
|
| Q |
316 |
ctggagaaagtatggacaaaaggatattcttggagctaagtttccaaggtaacaatcattttttacatcatctatgtttaatttgtgcaaacatatgctt |
415 |
Q |
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| T |
10194279 |
ctggagaaagtatggacaaaaggatattcttggagctaagtttccaaggtaacaatcattttttacatcatctatgtttaatttgtgcaaacatatgctt |
10194378 |
T |
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| Q |
416 |
aatgcttctttaaattcatagtaaatttttgttgcttattaaagtattatct |
467 |
Q |
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| T |
10194379 |
aatgcttctttaaattcatagtaaatttttgttgcttattaaagtattatct |
10194430 |
T |
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Back To:
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Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 288 - 365
Target Start/End: Complemental strand, 48411788 - 48411711
Alignment:
| Q |
288 |
ctgaagggtctgtggaggatggtcatagctggagaaagtatggacaaaaggatattcttggagctaagtttccaaggt |
365 |
Q |
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||||||||||| |||| |||| ||||||||||||| ||||| ||||||||||||||||||||||||||| |||||| |
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| T |
48411788 |
ctgaagggtctttggatgatgaatatagctggagaaaatatggtcaaaaggatattcttggagctaagttttcaaggt |
48411711 |
T |
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