View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20684_high_3 (Length: 489)
Name: NF20684_high_3
Description: NF20684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20684_high_3 |
 | |
|
| [»] scaffold0624 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 5 - 455
Target Start/End: Original strand, 18499503 - 18499952
Alignment:
| Q |
5 |
caacaataatctatcaaagtaaacatcaaatgcatccgataagttccaaccaatcatccttagattttgagataatatcaaatatcaataatatataata |
104 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18499503 |
caacaataatctatcaaagtaaatatcaaatgcatccgataagttccaaccaatcatccttagattttgagataatatcaaatatcaataatatataata |
18499602 |
T |
|
| Q |
105 |
gtatgtaaccctcatgttcggggttcatctaatatcaatacatcagcaatatctaaagcaaaaagaactgtaacatgtttgttttctaaccgtgaaaacc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
18499603 |
gtatgtaaccctcatgttcggggttcatctaatatcaatacatcagcaatatctaaagcaaaaagaactgtaacatgtttgttttctaactgtgaaaacc |
18499702 |
T |
|
| Q |
205 |
aaactacacaacacgacacctaagtagaaaaattccacataaagctaacaacagcttcaagaattcatcctaacccttctgaattgagatcttaatacat |
304 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18499703 |
aaactacacaacacgatacctaagtagaaaaattccacataaagctaacaacagcttcaagaattcatcctaacccttctgaattgagatcttaatacat |
18499802 |
T |
|
| Q |
305 |
cttcttacaaatctaacaagccaagagtgaagataatttcactaataattatctnnnnnnngcataaatccagtttacagcaggagtnnnnnnnccattc |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
18499803 |
cttcttacaaatctaacaagccaagagtgaagataatttcactaataattatct-aaaaaagcataaatccagtttacagcaggagtaaaaaaaccattc |
18499901 |
T |
|
| Q |
405 |
aaacataacccattttgcataacatgatattgattcatcggttatgaacat |
455 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
18499902 |
aaacataacccattttgcatagcatgatattgattcatcggttatgaacat |
18499952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0624 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0624
Description:
Target: scaffold0624; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 344 - 292
Alignment:
| Q |
20 |
aaagtaaacatcaaatgcatccgataagttccaaccaatcatccttagatttt |
72 |
Q |
| |
|
||||||||||||||||||||| | || ||| ||||||||||||||||||||| |
|
|
| T |
344 |
aaagtaaacatcaaatgcatcgaacaacttctaaccaatcatccttagatttt |
292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University