View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20684_high_4 (Length: 462)
Name: NF20684_high_4
Description: NF20684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20684_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Original strand, 39258731 - 39259161
Alignment:
| Q |
18 |
acatggaaacgaatgagtggtttccgagctggaaaactgggatagtgctttccattatactatttaacaaataatatatagtgtttgttaatttcatttt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39258731 |
acatggaaacgaatgagtggtttccgagctggaaaactgggatagtgctttccattatactatttaacaaataatatatagtgtttgttaatttcatttt |
39258830 |
T |
|
| Q |
118 |
tattatcatcactaatcactaattcatattatagtattgaaaacttttaacaacattctgactttctatagagaataatcaattttctaatgtttaacat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39258831 |
tattatcatcactaatcactaattcatattatagtattgaaaacttttaacaacattctgactttctatagagaataatcaattttctaatgtttaacat |
39258930 |
T |
|
| Q |
218 |
tactttatatgggaaggtcttgtgtttgaacctacatataagataataaagtttaatttgtcggtttatttgtgtacaaatatatgatatcaaagattat |
317 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39258931 |
taatttatatgggaaggtcttgtgtttgaacctacatataagataataaagtttaatttgtcggtttatttgtgtacaaatatatgatatcaaagattat |
39259030 |
T |
|
| Q |
318 |
caaccaaaaaatatatgatggaaaagattttttaaattgaaaatggaaattagggtgggaataaaatggacacctagaatgtgtgtttggaatgattagc |
417 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
39259031 |
caaccaaaaaatatatgatggaaaaaattttttaaattgaaaatggaaattagggtgggaataaaatggacacatagaatgtgtgtttggaatgattagc |
39259130 |
T |
|
| Q |
418 |
tcttgatcattgtatgagaggtaggccaagt |
448 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |
|
|
| T |
39259131 |
tcttgatcattgtatgggaggtaggccaagt |
39259161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University