View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20684_high_6 (Length: 396)
Name: NF20684_high_6
Description: NF20684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20684_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 45411908 - 45412211
Alignment:
| Q |
1 |
gtgtcctcccttttgcttttcaataatttaactagacacactaccaagcttgacatcattttccttgttttttaaccatcgttgacgtgaatgaatgaca |
100 |
Q |
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| T |
45411908 |
gtgtcctcccttttgcttttcaataatttaactagacacactaccaagcttgacatcattttccttgttttttaaccatcgttgacgtgaatgaatgaca |
45412007 |
T |
|
| Q |
101 |
tagtagtaatttttagggttagaattatttacggcaaatttgcgagtttattagaaagaagaagttaatctggttaatagcactacatatttttgtaaac |
200 |
Q |
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| T |
45412008 |
tagtagtaatttttagggttagaattatttacggcaaatttgcgagtttaatagaaagaagaagttaatctggttaatagcactacatatttttgtaaac |
45412107 |
T |
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| Q |
201 |
tgagaattaacgtattgaatgatgtaaaatgagtgtacgttcaaaagtatatataggttcgatgtgaaatgataatatctcacaaatttgtttgaacgcc |
300 |
Q |
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| T |
45412108 |
tgagaattaacgtattgaatgatgtaaaatgagtgtacgttcaaaagtatttataggttcgatgtgaaatgataatatctcacaaatttgtttgaacgcc |
45412207 |
T |
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| Q |
301 |
tatg |
304 |
Q |
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|||| |
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| T |
45412208 |
tatg |
45412211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 310 - 380
Target Start/End: Complemental strand, 45411638 - 45411569
Alignment:
| Q |
310 |
tcacgggaactcaatacacaatttctatatttcacattcttaacatatgtcttaaagacatatgttaacat |
380 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
45411638 |
tcacgggaactcgatacacaatttctatatttcacattcttaacatatgtctt-aagacatatgttaacat |
45411569 |
T |
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