View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20684_low_1 (Length: 661)

Name: NF20684_low_1
Description: NF20684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20684_low_1
NF20684_low_1
[»] chr1 (27 HSPs)
chr1 (315-644)||(37633618-37633949)
chr1 (1-218)||(37634006-37634223)
chr1 (480-642)||(9424521-9424682)
chr1 (527-640)||(26758517-26758630)
chr1 (468-607)||(19234795-19234934)
chr1 (493-590)||(38081624-38081721)
chr1 (519-620)||(43457914-43458015)
chr1 (468-616)||(25901792-25901940)
chr1 (524-619)||(42489199-42489294)
chr1 (527-616)||(6811675-6811764)
chr1 (534-644)||(26264969-26265079)
chr1 (469-597)||(34462722-34462851)
chr1 (539-588)||(41024827-41024876)
chr1 (512-619)||(37209836-37209943)
chr1 (542-607)||(51690108-51690173)
chr1 (496-619)||(36567350-36567474)
chr1 (468-577)||(18919257-18919366)
chr1 (538-619)||(30533227-30533308)
chr1 (516-584)||(39417015-39417083)
chr1 (475-558)||(41028278-41028361)
chr1 (495-577)||(22915210-22915292)
chr1 (539-590)||(9961369-9961420)
chr1 (538-593)||(30561977-30562031)
chr1 (530-592)||(1640209-1640271)
chr1 (525-607)||(49824083-49824165)
chr1 (530-607)||(50075599-50075676)
chr1 (548-616)||(49497056-49497124)
[»] chr2 (19 HSPs)
chr2 (475-625)||(11563428-11563578)
chr2 (468-644)||(4860449-4860624)
chr2 (527-607)||(37624993-37625073)
chr2 (524-594)||(39187512-39187582)
chr2 (539-626)||(2764134-2764220)
chr2 (524-607)||(34070805-34070888)
chr2 (469-607)||(37028868-37029006)
chr2 (534-619)||(15080152-15080237)
chr2 (531-607)||(14954915-14954991)
chr2 (468-607)||(21620677-21620814)
chr2 (519-592)||(2985248-2985320)
chr2 (531-644)||(35977351-35977464)
chr2 (579-644)||(39187599-39187664)
chr2 (493-592)||(44768832-44768931)
chr2 (561-607)||(15090437-15090483)
chr2 (512-593)||(43664797-43664878)
chr2 (531-644)||(37980370-37980483)
chr2 (494-558)||(38606911-38606974)
chr2 (523-607)||(39376068-39376152)
[»] chr4 (21 HSPs)
chr4 (468-607)||(52355873-52356012)
chr4 (468-644)||(30666831-30667007)
chr4 (468-590)||(51164561-51164683)
chr4 (539-607)||(27981699-27981766)
chr4 (540-644)||(54933161-54933265)
chr4 (493-640)||(30617549-30617696)
chr4 (526-607)||(7209251-7209332)
chr4 (468-607)||(8069900-8070037)
chr4 (474-588)||(25064118-25064233)
chr4 (474-600)||(54317011-54317137)
chr4 (475-607)||(13435384-13435516)
chr4 (468-589)||(19399834-19399955)
chr4 (512-605)||(27184073-27184166)
chr4 (552-619)||(5817864-5817931)
chr4 (469-597)||(37861163-37861292)
chr4 (539-607)||(54334749-54334819)
chr4 (561-607)||(10401483-10401529)
chr4 (531-577)||(46362779-46362825)
chr4 (468-597)||(46963880-46964010)
chr4 (530-588)||(49716101-49716159)
chr4 (527-559)||(53671608-53671640)
[»] chr6 (14 HSPs)
chr6 (468-640)||(26653287-26653459)
chr6 (468-640)||(26759255-26759427)
chr6 (468-644)||(15528322-15528498)
chr6 (468-644)||(12622503-12622677)
chr6 (494-624)||(29383930-29384059)
chr6 (531-607)||(6797078-6797154)
chr6 (468-644)||(11752935-11753117)
chr6 (484-592)||(23652615-23652725)
chr6 (512-605)||(2444045-2444138)
chr6 (531-605)||(28053481-28053555)
chr6 (524-607)||(1875120-1875201)
chr6 (532-607)||(13397146-13397222)
chr6 (531-622)||(28637584-28637675)
chr6 (469-595)||(19776688-19776813)
[»] chr8 (14 HSPs)
chr8 (469-619)||(8059901-8060051)
chr8 (493-619)||(44328479-44328605)
chr8 (537-624)||(24456331-24456418)
chr8 (467-604)||(36604061-36604200)
chr8 (527-619)||(11599638-11599730)
chr8 (512-574)||(12733783-12733845)
chr8 (534-623)||(43108249-43108338)
chr8 (468-568)||(8753291-8753391)
chr8 (528-593)||(43798733-43798798)
chr8 (524-644)||(18184370-18184490)
chr8 (494-607)||(17694690-17694800)
chr8 (527-589)||(18181727-18181789)
chr8 (548-590)||(40819346-40819388)
chr8 (514-559)||(43393356-43393401)
[»] chr3 (22 HSPs)
chr3 (469-642)||(4228782-4228955)
chr3 (468-619)||(50170480-50170631)
chr3 (474-621)||(16277560-16277706)
chr3 (469-622)||(31197793-31197947)
chr3 (537-619)||(44543033-44543115)
chr3 (474-644)||(11380151-11380319)
chr3 (468-607)||(37662921-37663059)
chr3 (534-633)||(44544727-44544826)
chr3 (537-643)||(53200895-53201001)
chr3 (469-644)||(4239081-4239261)
chr3 (524-607)||(54261815-54261898)
chr3 (508-605)||(53092401-53092498)
chr3 (513-617)||(11364792-11364895)
chr3 (531-594)||(46010384-46010447)
chr3 (539-590)||(48953936-48953987)
chr3 (513-599)||(39956162-39956248)
chr3 (525-622)||(3382635-3382732)
chr3 (39-87)||(53511635-53511683)
chr3 (531-607)||(9260944-9261018)
chr3 (39-118)||(3253634-3253713)
chr3 (526-645)||(50302950-50303069)
chr3 (517-557)||(26042285-26042325)
[»] chr7 (20 HSPs)
chr7 (468-644)||(24393476-24393652)
chr7 (514-618)||(46923614-46923718)
chr7 (508-619)||(39927674-39927784)
chr7 (534-644)||(43131884-43131994)
chr7 (495-607)||(2456725-2456840)
chr7 (527-640)||(43093580-43093693)
chr7 (551-619)||(26776142-26776210)
chr7 (540-619)||(8240731-8240810)
chr7 (476-590)||(31765393-31765507)
chr7 (492-593)||(3399384-3399485)
chr7 (468-577)||(40720367-40720476)
chr7 (468-588)||(6271315-6271435)
chr7 (503-644)||(16831570-16831711)
chr7 (539-616)||(46875227-46875301)
chr7 (546-604)||(6181618-6181675)
chr7 (530-644)||(23845526-23845639)
chr7 (539-644)||(29994625-29994730)
chr7 (540-607)||(10227786-10227850)
chr7 (537-570)||(15137302-15137335)
chr7 (492-593)||(27645211-27645312)
[»] chr5 (16 HSPs)
chr5 (493-607)||(22874218-22874332)
chr5 (482-644)||(33741603-33741770)
chr5 (468-644)||(28735269-28735444)
chr5 (493-605)||(38869913-38870024)
chr5 (531-607)||(25650484-25650561)
chr5 (468-593)||(40112978-40113103)
chr5 (517-591)||(15595016-15595089)
chr5 (527-624)||(1866933-1867030)
chr5 (39-124)||(910740-910825)
chr5 (513-584)||(36491832-36491903)
chr5 (468-597)||(523627-523757)
chr5 (493-597)||(10647905-10648009)
chr5 (527-605)||(19521465-19521543)
chr5 (544-582)||(28041558-28041596)
chr5 (567-644)||(39743512-39743589)
chr5 (527-606)||(23263009-23263088)
[»] scaffold1173 (1 HSPs)
scaffold1173 (474-644)||(87-256)
[»] scaffold0024 (1 HSPs)
scaffold0024 (513-644)||(45802-45933)


Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 315 - 644
Target Start/End: Complemental strand, 37633949 - 37633618
Alignment:
Q  315 tcttgaccggtgttctctaaaacaatttcaagnnnnnnngtaaatgtagataaatgagtaatttggggaatacacctatatttattactatattaagaaa 414  Q
    ||||||||| ||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37633949 tcttgaccgatgttctctaaaacaatttcaagaaaaaaagtaaatgtagataaatgagtaatttggggaatacacctatatttattactatattaagaaa 37633850  T
Q  415 agtga-tgataaataaaaaatttcattagtttactacaaannnnnnnn-cttcatgaaatattaacttgtgcccttgatacataagttacgaagctaatt 512  Q
    ||||| ||||||||||||||||||||||||||| ||| ||         ||||| ||||| |||||||||||| |||| |||||||||||||||||||||    
T  37633849 agtgaatgataaataaaaaatttcattagtttagtactaatttttttttcttcaggaaatgttaacttgtgcctttgagacataagttacgaagctaatt 37633750  T
Q  513 gtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaatctac 612  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37633749 gtagaagtttattcttaaaaattgtgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaatctac 37633650  T
Q  613 ttaacttatgtcataaagacacaagttaacat 644  Q
    |||||||||| ||||||| |||||||||||||    
T  37633649 ttaacttatgccataaaggcacaagttaacat 37633618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 37634006 - 37634223
Alignment:
Q  1 cgtatatagtatggagcgatcttataaaattatcgtactataattatttttcatttttatcatttgtgactaattttaattgattatatagtgaaaaaat 100  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37634006 cgtatatagtattgagcgatcttataaaattatcatactataattatttttcatttttatcatttgtgactaattttaattgattatatagtgaaaaaat 37634105  T
Q  101 tagtatattataataggtcgataattttaatttttaaaaatctattaaactattggtactacaatgtcatttgtccagaaattttcactctcttttgctt 200  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37634106 tagtatattataataggtcgataattttaacttttaaaaatctattaaactattggtactacaatgtcatttgtccagaaattttcactctcttttgctt 37634205  T
Q  201 tccttctatttgttgggt 218  Q
    ||||||||||||||||||    
T  37634206 tccttctatttgttgggt 37634223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 480 - 642
Target Start/End: Original strand, 9424521 - 9424682
Alignment:
Q  480 tgtgcccttgatacataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaaca 579  Q
    ||||| ||||| ||||| |||| |||| ||| ||||||||||| || ||| ||||| |||||||||||| ||||||||||||||||||||||||| || |    
T  9424521 tgtgctcttgagacatatgttaagaagttaaatgtagaagtttttttttgcaaattgtgcattcaatgt-ttaaaagtttcaaaagttatatttttaata 9424619  T
Q  580 taaaatttatttttaatttccattttaatctacttaacttatgtcataaagacacaagttaac 642  Q
    ||||||||||||||||||||||||||||  | ||||||||||||| |||   |||||||||||    
T  9424620 taaaatttatttttaatttccattttaagttccttaacttatgtcctaagagcacaagttaac 9424682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 527 - 640
Target Start/End: Original strand, 26758517 - 26758630
Alignment:
Q  527 ttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaatctacttaacttatgtcat 626  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| || ||||||||||||  |    
T  26758517 ttgaaaattgtgcattcaatgtgttaaaagtttcaaaagttatattttcaatataaattttatttttaattttcattttaagctccttaacttatgttgt 26758616  T
Q  627 aaagacacaagtta 640  Q
    || | |||||||||    
T  26758617 aagggcacaagtta 26758630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 468 - 607
Target Start/End: Original strand, 19234795 - 19234934
Alignment:
Q  468 gaaatattaacttgtgcccttgatacataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagtt 567  Q
    ||||| ||||||||||||||||   ||||||||| ||| | || ||||||| ||| |||||| ||  | |||||||||||||| | ||||| ||||||||    
T  19234795 gaaatgttaacttgtgcccttgcggcataagttaagaaaccaaatgtagaaattttttcttggaacctgtgcattcaatgtctcagaagttgcaaaagtt 19234894  T
Q  568 atattttcaacataaaatttatttttaatttccattttaa 607  Q
    ||| |||||| |||||||||||||||||||||||||||||    
T  19234895 atactttcaatataaaatttatttttaatttccattttaa 19234934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 493 - 590
Target Start/End: Complemental strand, 38081721 - 38081624
Alignment:
Q  493 cataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatt 590  Q
    ||||||||| ||| |||| ||| ||||||| |||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  38081721 cataagttaagaaactaaatgttgaagttttttcttggaaattgtgcattcaatgtcttaaaagtttcaaaagttatcttttcaatataaaatttatt 38081624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 519 - 620
Target Start/End: Complemental strand, 43458015 - 43457914
Alignment:
Q  519 gtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaatctacttaact 618  Q
    |||| |||||| || || |||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||| ||  ||||||    
T  43458015 gttttttcttggaacttgtgcattcaatgtcttaaaagttgcaaaagttatactttcaatataaaatttatttttaatttccattttaaactctttaact 43457916  T
Q  619 ta 620  Q
    ||    
T  43457915 ta 43457914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 468 - 616
Target Start/End: Complemental strand, 25901940 - 25901792
Alignment:
Q  468 gaaatattaacttgtgcccttgatacataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagtt 567  Q
    ||||| ||||||||||||||||  |||||||||| ||| |||| | |||||| || |||||| || |||||||||||||||||| |||||| ||||||||    
T  25901940 gaaatgttaacttgtgcccttgggacataagttaagaaactaaatctagaaggtttttcttggaatttatgcattcaatgtcttgaaagttgcaaaagtt 25901841  T
Q  568 atattttcaacataaaatttatttttaatttccattttaatctacttaa 616  Q
    ||  ||| || || || ||||||||| ||||||||||||| || |||||    
T  25901840 atccttttaatatgaactttattttttatttccattttaagctccttaa 25901792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 524 - 619
Target Start/End: Complemental strand, 42489294 - 42489199
Alignment:
Q  524 ttcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaatctacttaactt 619  Q
    ||||||||| || |||||||| ||||||||||||| ||||||||||| ||| || ||||||||||||||||||||||||||||| || ||||||||    
T  42489294 ttcttgaaacttgtgcattcattgtcttaaaagttgcaaaagttatacttttaatataaaatttatttttaatttccattttaaactccttaactt 42489199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 527 - 616
Target Start/End: Complemental strand, 6811764 - 6811675
Alignment:
Q  527 ttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaatctacttaa 616  Q
    |||||| || |||||||||||||||| ||||||||||||||||||||||||  ||||| ||||||| ||||| |||||||| || |||||    
T  6811764 ttgaaagttgtgcattcaatgtcttacaagtttcaaaagttatattttcaaagtaaaaattattttaaatttgcattttaagctccttaa 6811675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 534 - 644
Target Start/End: Complemental strand, 26265079 - 26264969
Alignment:
Q  534 ttatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaatctacttaacttatgtcataaagaca 633  Q
    |||| |||| |||||||||||||||  |||| ||| | ||| || ||||||||||||||||||||||||||||| || ||| ||||||||| |||   ||    
T  26265079 ttatacatttaatgtcttaaaagttataaaaattacacttttaatataaaatttatttttaatttccattttaaactcctttacttatgtcttaagagca 26264980  T
Q  634 caagttaacat 644  Q
    |||||||||||    
T  26264979 caagttaacat 26264969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 469 - 597
Target Start/End: Original strand, 34462722 - 34462851
Alignment:
Q  469 aaatattaacttgtgcccttgatacataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagtta 568  Q
    |||| ||||||||||||||| | ||| |||||  ||||  || ||||||| |||||| ||||||||| ||||||||||||||| |||| || |||| |||    
T  34462722 aaatgttaacttgtgcccttaagacacaagtttagaagtcaaatgtagaaatttatttttgaaaattgtgcattcaatgtcttgaaaggttgaaaactta 34462821  T
Q  569 tattttcaacataaaatttat-ttttaatt 597  Q
    ||||||||| | |||| |||| ||||||||    
T  34462822 tattttcaatacaaaagttatgttttaatt 34462851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 539 - 588
Target Start/End: Complemental strand, 41024876 - 41024827
Alignment:
Q  539 cattcaatgtcttaaaagtttcaaaagttatattttcaacataaaattta 588  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41024876 cattcaatgtcttaaaagtttcaaaagttatattttcaatataaaattta 41024827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 512 - 619
Target Start/End: Original strand, 37209836 - 37209943
Alignment:
Q  512 tgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaatcta 611  Q
    ||||||||||| |||||| ||||| |||||| ||| |||||||||||||||||||||| ||||||| || || ||| | ||| | ||||||||| | ||     
T  37209836 tgtagaagttttttcttggaaattgtgcatttaatatcttaaaagtttcaaaagttatcttttcaatattaagtttgtcttttaattccatttttagctt 37209935  T
Q  612 cttaactt 619  Q
    ||||||||    
T  37209936 cttaactt 37209943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 542 - 607
Target Start/End: Original strand, 51690108 - 51690173
Alignment:
Q  542 tcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaa 607  Q
    |||||||||| ||| ||| ||||| ||||||||||| |||||||||||||||||||| ||||||||    
T  51690108 tcaatgtcttcaaaattttaaaagatatattttcaatataaaatttatttttaattttcattttaa 51690173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 496 - 619
Target Start/End: Complemental strand, 36567474 - 36567350
Alignment:
Q  496 aagttacgaagctaattgtagaagtttattcttgaaaa-ttatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttattttta 594  Q
    |||||| ||| |||| ||||||||||| ||  | |||| || ||||||||||||||| |||||||||||| ||||  |||||| ||||||||||||| |     
T  36567474 aagttaagaaactaaatgtagaagtttttttattaaaagttgtgcattcaatgtcttgaaagtttcaaaaattatcatttcaatataaaatttatttgtt 36567375  T
Q  595 atttccattttaatctacttaactt 619  Q
    | ||| ||||||| || ||||||||    
T  36567374 aattctattttaaactccttaactt 36567350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 468 - 577
Target Start/End: Original strand, 18919257 - 18919366
Alignment:
Q  468 gaaatattaacttgtgcccttgatacataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagtt 567  Q
    ||||| ||||||||||||||| |  || |||||   |||| || |||||||  ||||| ||||||||| ||||||||||||||| |||| || |||| ||    
T  18919257 gaaatgttaacttgtgcccttaaggcacaagtttataagccaaatgtagaaacttatttttgaaaattgtgcattcaatgtcttgaaaggttaaaaattt 18919356  T
Q  568 atattttcaa 577  Q
    ||||||||||    
T  18919357 atattttcaa 18919366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 538 - 619
Target Start/End: Complemental strand, 30533308 - 30533227
Alignment:
Q  538 gcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaatctacttaactt 619  Q
    ||||| |||||||||||| ||||||||| ||| ||||||| ||||||||||| ||| | ||| ||||||| || ||||||||    
T  30533308 gcatttaatgtcttaaaaatttcaaaagctatcttttcaatataaaatttatcttttaattctattttaagctccttaactt 30533227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 516 - 584
Target Start/End: Complemental strand, 39417083 - 39417015
Alignment:
Q  516 gaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaa 584  Q
    ||||||| ||||||||||||  ||||||||| |||| ||||||||||||| ||| ||||||||| ||||    
T  39417083 gaagttttttcttgaaaattgagcattcaatttcttgaaagtttcaaaagatattttttcaacaaaaaa 39417015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 475 - 558
Target Start/End: Original strand, 41028278 - 41028361
Alignment:
Q  475 taacttgtgcccttgatacataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtt 558  Q
    |||||||| |||||||  |||||| || |||| ||| ||| ||||||| |||||||||| | || |||||||||||||||||||    
T  41028278 taacttgtacccttgaggcataagataagaagttaaatgtggaagttttttcttgaaaactgtgtattcaatgtcttaaaagtt 41028361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 495 - 577
Target Start/End: Complemental strand, 22915292 - 22915210
Alignment:
Q  495 taagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaa 577  Q
    ||||||| ||| |||| |||| ||| || ||||||||| || | ||||||||| ||||||| ||||||||||||| |||||||    
T  22915292 taagttaagaaactaaatgtataagctttttcttgaaagttttacattcaatgacttaaaaatttcaaaagttatcttttcaa 22915210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 539 - 590
Target Start/End: Complemental strand, 9961420 - 9961369
Alignment:
Q  539 cattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatt 590  Q
    ||||| || ||||||| |||| ||||||||||||||||| ||||||||||||    
T  9961420 cattccatatcttaaacgtttaaaaagttatattttcaatataaaatttatt 9961369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 538 - 593
Target Start/End: Complemental strand, 30562031 - 30561977
Alignment:
Q  538 gcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttattttt 593  Q
    |||||||||||||||||| ||||||||||||| |||| || ||||| |||||||||    
T  30562031 gcattcaatgtcttaaaa-tttcaaaagttatctttttaatataaattttattttt 30561977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 530 - 592
Target Start/End: Complemental strand, 1640271 - 1640209
Alignment:
Q  530 aaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttt 592  Q
    |||||| ||||||||||||||| ||||||| |||| |||| ||||||| | ||| ||||||||    
T  1640271 aaaattgtgcattcaatgtcttgaaagtttaaaaacttattttttcaatacaaattttatttt 1640209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 525 - 607
Target Start/End: Original strand, 49824083 - 49824165
Alignment:
Q  525 tcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaa 607  Q
    |||| ||||||||||||||||||   |||||||||||||| ||||||||  || |||||| ||||| | | ||| ||||||||    
T  49824083 tcttaaaaattatgcattcaatgcaataaaagtttcaaaaattatatttataatataaaagttattatgacttttcattttaa 49824165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 530 - 607
Target Start/End: Original strand, 50075599 - 50075676
Alignment:
Q  530 aaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaa 607  Q
    |||||| ||||||||   |||||||||||| ||||||||| ||||||||  || ||||||| || ||||| |||||||    
T  50075599 aaaattgtgcattcataatcttaaaagtttaaaaagttatcttttcaacgcaatatttattgtttatttctattttaa 50075676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 548 - 616
Target Start/End: Complemental strand, 49497124 - 49497056
Alignment:
Q  548 tcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaatctacttaa 616  Q
    |||||| |||| ||||||||||| ||| || ||| ||| |||||||||||| |||||||| || |||||    
T  49497124 tcttaagagttgcaaaagttatacttttaatatataatatatttttaattttcattttaaactccttaa 49497056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 2e-41; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 475 - 625
Target Start/End: Original strand, 11563428 - 11563578
Alignment:
Q  475 taacttgtgcccttgatacataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatatttt 574  Q
    |||||||||||||||  |||||||||| |||||||| |||||||     |||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  11563428 taacttgtgcccttgggacataagttaagaagctaaatgtagaaaaaatttcttgaaaattgtgcattcaatgtcttaaaagtttcaaaggttatatttt 11563527  T
Q  575 caacataaaatttatttttaatttccattttaatctacttaacttatgtca 625  Q
    ||| |||||||||||||| |||||||||||||| || |||||||| |||||    
T  11563528 caatataaaatttattttaaatttccattttaagcttcttaacttgtgtca 11563578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 468 - 644
Target Start/End: Complemental strand, 4860624 - 4860449
Alignment:
Q  468 gaaatattaacttgtgcccttgatacataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagtt 567  Q
    ||||| ||||||||||||||| |  ||||||||| ||||  || |||||||  || |||||| || || |||||||||||||||||||||| ||||| ||    
T  4860624 gaaatgttaacttgtgccctt-aggcataagttaagaagacaaatgtagaaagtttttcttggaacttgtgcattcaatgtcttaaaagttgcaaaaatt 4860526  T
Q  568 atattttcaacataaaatttatttttaatttccattttaatctacttaacttatgtcataaagacacaagttaacat 644  Q
    ||| |||||| ||||||||||||||||||||||||||||| || |||||||| || | ||| | |||||||||||||    
T  4860525 atactttcaatataaaatttatttttaatttccattttaaacttcttaacttgtgccctaagggcacaagttaacat 4860449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 527 - 607
Target Start/End: Original strand, 37624993 - 37625073
Alignment:
Q  527 ttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaa 607  Q
    ||||||||| |||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  37624993 ttgaaaattgtgcattcaatatcttaaaagttttaaaagttatattttcaatataaaatttatttttaatttccattttaa 37625073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 524 - 594
Target Start/End: Original strand, 39187512 - 39187582
Alignment:
Q  524 ttcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttattttta 594  Q
    ||||||||| || |||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||    
T  39187512 ttcttgaaacttgtgcattcaatatcttaaaagttgcaaaagttatattttcaatataaaatttattttta 39187582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 539 - 626
Target Start/End: Original strand, 2764134 - 2764220
Alignment:
Q  539 cattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaatctacttaacttatgtcat 626  Q
    ||||||||||||||||||||||||||||||| ||||||| || ||| |||||||||| |||| |||||| || |||||||| ||||||    
T  2764134 cattcaatgtcttaaaagtttcaaaagttatcttttcaatatcaaacttatttttaa-ttccgttttaaacttcttaacttgtgtcat 2764220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 524 - 607
Target Start/End: Original strand, 34070805 - 34070888
Alignment:
Q  524 ttcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaa 607  Q
    ||||||||| || |||||||||||| ||||||||| ||||||| ||| |||||| ||||||||||||||||||||  |||||||    
T  34070805 ttcttgaaacttgtgcattcaatgttttaaaagttgcaaaagtaatactttcaatataaaatttatttttaatttatattttaa 34070888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 469 - 607
Target Start/End: Original strand, 37028868 - 37029006
Alignment:
Q  469 aaatattaacttgtgcccttgatacataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagtta 568  Q
    |||| ||||||||||||||| | |||||||||| | |   || ||||||||||| |  ||| ||||| || |||||||||||||||| | ||||||| ||    
T  37028868 aaatgttaacttgtgcccttaagacataagttaagtaatcaaatgtagaagtttttatttggaaattgtgtattcaatgtcttaaaaatctcaaaagata 37028967  T
Q  569 tattttcaacataaaatttatttttaatttccattttaa 607  Q
    || ||| || |||||| |||||||| |||||||||||||    
T  37028968 taattttaatataaaacttattttttatttccattttaa 37029006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 534 - 619
Target Start/End: Original strand, 15080152 - 15080237
Alignment:
Q  534 ttatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaatctacttaactt 619  Q
    ||||| ||| ||||||||||||||| ||||||||||| |||||| ||||||| ||||||||||||  ||||||| || ||||||||    
T  15080152 ttatgtatttaatgtcttaaaagttgcaaaagttatactttcaatataaaatatatttttaatttttattttaaactccttaactt 15080237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 531 - 607
Target Start/End: Original strand, 14954915 - 14954991
Alignment:
Q  531 aaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaa 607  Q
    ||||||||  |||||| |||||||| ||| ||||||||||||||||| ||||||||||||||||||||  |||||||    
T  14954915 aaattatgtgttcaatatcttaaaaattttaaaagttatattttcaatataaaatttatttttaatttttattttaa 14954991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 468 - 607
Target Start/End: Complemental strand, 21620814 - 21620677
Alignment:
Q  468 gaaatattaacttgtgcccttgatacataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagtt 567  Q
    ||||| |||||||||||| ||||  ||||||||| ||| | || ||||||||  | | |||| ||||| |||||| |||||||| ||||| |||||  ||    
T  21620814 gaaatgttaacttgtgcctttgaggcataagttaagaaaccaaatgtagaagaatttacttggaaattgtgcatttaatgtcttgaaagtctcaaa--tt 21620717  T
Q  568 atattttcaacataaaatttatttttaatttccattttaa 607  Q
    |||||||||  |||||| |||||||| |||||||||||||    
T  21620716 atattttcattataaaacttattttttatttccattttaa 21620677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 519 - 592
Target Start/End: Original strand, 2985248 - 2985320
Alignment:
Q  519 gtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttt 592  Q
    |||| ||||| |||||| |||||||||||||||||||||||| ||||||||||||| || ||| ||||||||||    
T  2985248 gttttttcttaaaaattgtgcattcaatgtcttaaaagtttc-aaagttatatttttaatatagaatttatttt 2985320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 531 - 644
Target Start/End: Original strand, 35977351 - 35977464
Alignment:
Q  531 aaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaatctacttaacttatgtcataaag 630  Q
    ||||||||||||||||||||| ||| ||| ||||||||| ||||||| |||||| |||| ||| | |||  |||| |  | |||||||| || | |||||    
T  35977351 aaattatgcattcaatgtcttgaaaatttaaaaagttattttttcaatataaaacttatattttaattctttttttagatccttaacttgtgccttaaag 35977450  T
Q  631 acacaagttaacat 644  Q
    ||||||||||||||    
T  35977451 acacaagttaacat 35977464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 579 - 644
Target Start/End: Original strand, 39187599 - 39187664
Alignment:
Q  579 ataaaatttatttttaatttccattttaatctacttaacttatgtcataaagacacaagttaacat 644  Q
    |||||||||||||||||||| |||||||| || |||||||| ||||  ||||||||||||||||||    
T  39187599 ataaaatttatttttaattttcattttaagctccttaacttgtgtcccaaagacacaagttaacat 39187664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 493 - 592
Target Start/End: Original strand, 44768832 - 44768931
Alignment:
Q  493 cataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttt 592  Q
    ||||||||| ||| |||| || | || ||| ||||| ||||||  ||||| |||||||||||| ||||||||||||||||||| | |||| |||||||||    
T  44768832 cataagttaagaaactaaatgcataaattttttcttaaaaattgagcatttaatgtcttaaaaatttcaaaagttatattttctatataatatttatttt 44768931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 561 - 607
Target Start/End: Complemental strand, 15090483 - 15090437
Alignment:
Q  561 aaaagttatattttcaacataaaatttatttttaatttccattttaa 607  Q
    |||||||||||||| || |||||||||||||||||||||||||||||    
T  15090483 aaaagttatatttttaatataaaatttatttttaatttccattttaa 15090437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 512 - 593
Target Start/End: Original strand, 43664797 - 43664878
Alignment:
Q  512 tgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttattttt 593  Q
    ||||||| |||| |||| |||||| |||||||||  |||||||||||| |||| ||||||||||||  ||| ||||||||||    
T  43664797 tgtagaaatttaatcttaaaaattgtgcattcaaaatcttaaaagtttaaaaacttatattttcaatgtaatatttattttt 43664878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 531 - 644
Target Start/End: Original strand, 37980370 - 37980483
Alignment:
Q  531 aaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaatctacttaacttatgtcataaag 630  Q
    ||||| |||||||||| | |||||||||| |||  |||||||||||| | |||| ||| |||| | ||||||||| |  | |||||||| || | | | |    
T  37980370 aaattgtgcattcaatatattaaaagtttgaaattttatattttcaatacaaaagttactttttaattccatttttagtttcttaacttgtgcccttagg 37980469  T
Q  631 acacaagttaacat 644  Q
    ||||||||||||||    
T  37980470 acacaagttaacat 37980483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 494 - 558
Target Start/End: Complemental strand, 38606974 - 38606911
Alignment:
Q  494 ataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtt 558  Q
    |||||||| ||| | || ||||||||||| || || |||||||| ||||||||||||||||||||    
T  38606974 ataagttaagaaacaaaatgtagaagttt-ttattaaaaattatacattcaatgtcttaaaagtt 38606911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 523 - 607
Target Start/End: Complemental strand, 39376152 - 39376068
Alignment:
Q  523 attcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaa 607  Q
    |||||| ||| || |||||||||   ||||||| ||  |||||||||| ||  || |||||||||||||||||||| ||||||||    
T  39376152 attcttaaaacttgtgcattcaagaccttaaaaattgtaaaagttatacttataatataaaatttatttttaattttcattttaa 39376068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 8e-35; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 468 - 607
Target Start/End: Complemental strand, 52356012 - 52355873
Alignment:
Q  468 gaaatattaacttgtgcccttgatacataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagtt 567  Q
    ||||| |||||||||||||||||  ||||||||| ||| | || | ||| ||| | || ||| ||||| |||||||||||||||||||||||||||||||    
T  52356012 gaaatgttaacttgtgcccttgaggcataagttaagaaaccaaatttagtagtattttattggaaattgtgcattcaatgtcttaaaagtttcaaaagtt 52355913  T
Q  568 atattttcaacataaaatttatttttaatttccattttaa 607  Q
    |||||||||  |||||||||||||||||||||||||||||    
T  52355912 atattttcattataaaatttatttttaatttccattttaa 52355873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 468 - 644
Target Start/End: Original strand, 30666831 - 30667007
Alignment:
Q  468 gaaatattaacttgtgcccttgatacataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagtt 567  Q
    ||||| |||||||||||||||||  || |||||| ||| | || |||||||| || || ||| || || |||||||||||||||||||||| ||||||||    
T  30666831 gaaatgttaacttgtgcccttgaggcacaagttaagaaaccaaatgtagaaggttttttttggaacttgtgcattcaatgtcttaaaagttgcaaaagtt 30666930  T
Q  568 atattttcaacataaaatttatttttaatttccattttaatctacttaacttatgtcataaagacacaagttaacat 644  Q
    ||| || ||| ||||||||||||||||||||| ||||||| || |||||||| || | | | | |||||||||||||    
T  30666931 atacttccaatataaaatttatttttaatttctattttaagctccttaacttgtgcccttagggcacaagttaacat 30667007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 468 - 590
Target Start/End: Complemental strand, 51164683 - 51164561
Alignment:
Q  468 gaaatattaacttgtgcccttgatacataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagtt 567  Q
    ||||| |||||||||||||||||  || |||||| ||| |||| ||| ||| ||| |||||||||| | |||||||||||||||||||||||||||||||    
T  51164683 gaaatgttaacttgtgcccttgaggcagaagttaagaaactaaatgtggaaattttttcttgaaaagtgtgcattcaatgtcttaaaagtttcaaaagtt 51164584  T
Q  568 atattttcaacataaaatttatt 590  Q
    || ||||||| ||||||||||||    
T  51164583 attttttcaatataaaatttatt 51164561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 539 - 607
Target Start/End: Complemental strand, 27981766 - 27981699
Alignment:
Q  539 cattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaa 607  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||    
T  27981766 cattcaatgtcttaaaagtttcaaaa-ttatattttcaatataaaatttatttttaatttctattttaa 27981699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 540 - 644
Target Start/End: Original strand, 54933161 - 54933265
Alignment:
Q  540 attcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaatctacttaacttatgtcataaagacacaagtt 639  Q
    ||||||| ||||||||||| ||||||||||| ||| || |||||||||||||||||||||| |||||| || |||||||| || | ||||  ||||||||    
T  54933161 attcaatatcttaaaagttgcaaaagttatacttttaatataaaatttatttttaatttcctttttaagcttcttaacttgtgccctaaatgcacaagtt 54933260  T
Q  640 aacat 644  Q
    |||||    
T  54933261 aacat 54933265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 493 - 640
Target Start/End: Complemental strand, 30617696 - 30617549
Alignment:
Q  493 cataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttt 592  Q
    ||||||||| ||| | || | ||||||||| |||||| ||||| |||||||||| ||||||||||||||||||||||  |||||| |||||||||| |||    
T  30617696 cataagttaagaaaccaaatatagaagttttttcttggaaattgtgcattcaatctcttaaaagtttcaaaagttatcctttcaatataaaatttacttt 30617597  T
Q  593 taatttccattttaatctacttaacttatgtcataaagacacaagtta 640  Q
      | ||| ||||||| || |||||||| || | ||| | |||||||||    
T  30617596 ctaattctattttaagctccttaacttgtgccctaagggcacaagtta 30617549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 526 - 607
Target Start/End: Original strand, 7209251 - 7209332
Alignment:
Q  526 cttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaa 607  Q
    ||||||| || |||||||||||||||||||||| ||||||||||| |||||| |||||||| |||||| ||||| |||||||    
T  7209251 cttgaaacttgtgcattcaatgtcttaaaagttgcaaaagttatactttcaatataaaattaattttttatttctattttaa 7209332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 468 - 607
Target Start/End: Original strand, 8069900 - 8070037
Alignment:
Q  468 gaaatattaacttgtgcccttgatacataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagtt 567  Q
    |||||||||||||||| | ||||  |||||||||  |||  || | || |||||| ||||||||| || | ||||||| || ||||||||||||||| ||    
T  8069900 gaaatattaacttgtgac-ttgaagcataagttaaaaagtcaaatatataagttttttcttgaaa-ttgtacattcaaagttttaaaagtttcaaaaatt 8069997  T
Q  568 atattttcaacataaaatttatttttaatttccattttaa 607  Q
    |||||||||| ||||||||||| |||||||| ||||||||    
T  8069998 atattttcaatataaaatttatctttaattttcattttaa 8070037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 474 - 588
Target Start/End: Complemental strand, 25064233 - 25064118
Alignment:
Q  474 ttaacttgtgcccttgatacataagttacgaagctaattgtagaagtttattcttga-aaattatgcattcaatgtcttaaaagtttcaaaagttatatt 572  Q
    ||||||||||||||||| |||||||||| |||  ||| |||  |||||| || || | ||||| |  |||||||||||||||||||||||||||||| ||    
T  25064233 ttaacttgtgcccttgagacataagttaagaaagtaaatgtgaaagttttttttttagaaattgtaaattcaatgtcttaaaagtttcaaaagttatctt 25064134  T
Q  573 ttcaacataaaattta 588  Q
    ||||| ||||||||||    
T  25064133 ttcaatataaaattta 25064118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 474 - 600
Target Start/End: Original strand, 54317011 - 54317137
Alignment:
Q  474 ttaacttgtgcccttgatacataagttacgaagctaattgtag-aagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatatt 572  Q
    |||||||||||| ||||   |||||||| ||||  || ||||| |||||| |||| |||| || |||||||||||||| ||| ||| ||||||||| | |    
T  54317011 ttaacttgtgccattgaggtataagttaagaagacaaatgtagtaagttttttct-gaaacttgtgcattcaatgtctcaaatgttgcaaaagttaaact 54317109  T
Q  573 ttcaacataaaatttatttttaatttcc 600  Q
    ||||| ||||||||||||||||||||||    
T  54317110 ttcaatataaaatttatttttaatttcc 54317137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 475 - 607
Target Start/End: Complemental strand, 13435516 - 13435384
Alignment:
Q  475 taacttgtgcccttgatacataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatatttt 574  Q
    ||||| |||||||||  |||||||||| ||| | || | || |||||| |||||| ||||| |  ||| ||| |||||||||||| |||| |||| ||||    
T  13435516 taactcgtgcccttgggacataagttaagaaaccaaatataaaagttttttcttggaaattgtatatttaatttcttaaaagttttaaaacttatgtttt 13435417  T
Q  575 caacataaaatttatttttaatttccattttaa 607  Q
    ||| | |||| |||||||| |||||||||||||    
T  13435416 caatacaaaacttattttttatttccattttaa 13435384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 468 - 589
Target Start/End: Original strand, 19399834 - 19399955
Alignment:
Q  468 gaaatattaacttgtgcccttgatacataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagtt 567  Q
    ||||||||||||||||||||| | ||| |||||  | ||| || | |||||  ||||| ||| ||||| ||||||||||||||| ||| ||| |||| ||    
T  19399834 gaaatattaacttgtgcccttaagacacaagtttagtagccaaatatagaaacttatttttggaaattgtgcattcaatgtcttgaaaatttaaaaactt 19399933  T
Q  568 atattttcaacataaaatttat 589  Q
    || ||||||| | |||||||||    
T  19399934 attttttcaatacaaaatttat 19399955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 512 - 605
Target Start/End: Original strand, 27184073 - 27184166
Alignment:
Q  512 tgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccatttt 605  Q
    |||||||| || || ||| || ||| ||||| |||||||||||| || ||||||||||| ||| || |||||||| |||||| |||||||||||    
T  27184073 tgtagaagattttttttggaatttaggcatttaatgtcttaaaaattgcaaaagttatacttttaatataaaattgattttttatttccatttt 27184166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 552 - 619
Target Start/End: Original strand, 5817864 - 5817931
Alignment:
Q  552 aaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaatctacttaactt 619  Q
    ||||||| ||||||||||| ||| || | |||| |||||||||||||||||||||| || ||||||||    
T  5817864 aaaagttacaaaagttatacttttaataaaaaaattatttttaatttccattttaagctccttaactt 5817931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 469 - 597
Target Start/End: Original strand, 37861163 - 37861292
Alignment:
Q  469 aaatattaacttgtgcccttgatacataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagtta 568  Q
    |||| ||||||||||||||| |  || |||||  ||| | || |||||||  ||| | ||| ||||| ||||||||||||||| ||||||| ||||||||    
T  37861163 aaatgttaacttgtgcccttaaggcacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcattcaatgtcttgaaagtttaaaaagtta 37861262  T
Q  569 tattttcaacataaaatttat-ttttaatt 597  Q
    | ||||||| | |||| |||| ||||||||    
T  37861263 ttttttcaatacaaaacttatgttttaatt 37861292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 539 - 607
Target Start/End: Original strand, 54334749 - 54334819
Alignment:
Q  539 cattcaatgtcttaaaagtttcaaaagttatattttcaacataaaattta--tttttaatttccattttaa 607  Q
    |||||||| | ||| |||||||||| ||||||||||||| |||||| |||  ||||| |||||||||||||    
T  54334749 cattcaatattttacaagtttcaaatgttatattttcaatataaaacttattttttttatttccattttaa 54334819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 561 - 607
Target Start/End: Complemental strand, 10401529 - 10401483
Alignment:
Q  561 aaaagttatattttcaacataaaatttatttttaatttccattttaa 607  Q
    ||||||| |||||| || ||||||||||||||||||||| |||||||    
T  10401529 aaaagttgtatttttaatataaaatttatttttaatttctattttaa 10401483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 531 - 577
Target Start/End: Complemental strand, 46362825 - 46362779
Alignment:
Q  531 aaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaa 577  Q
    ||||| ||||||||||||||| ||||||| ||||||||| |||||||    
T  46362825 aaattgtgcattcaatgtcttgaaagttttaaaagttattttttcaa 46362779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 468 - 597
Target Start/End: Complemental strand, 46964010 - 46963880
Alignment:
Q  468 gaaatattaacttgtgcccttgatacataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagtt 567  Q
    ||||| ||||||||||||||| |  || |||||  ||| | || |||||||  ||| | ||| ||||  ||||||||||||||| ||||||| |||||||    
T  46964010 gaaatgttaacttgtgcccttaaggcacaagtttagaaaccaaatgtagaaacttaattttggaaatcgtgcattcaatgtcttgaaagtttaaaaagtt 46963911  T
Q  568 atattttcaacataaaatttat-ttttaatt 597  Q
    || ||||||| | |||| |||| ||||||||    
T  46963910 attttttcaatacaaaacttatgttttaatt 46963880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 530 - 588
Target Start/End: Complemental strand, 49716159 - 49716101
Alignment:
Q  530 aaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaattta 588  Q
    ||||||||||||| ||| ||||||||||| ||||||||| | ||| || ||||||||||    
T  49716159 aaaattatgcatttaatctcttaaaagttgcaaaagttacacttttaatataaaattta 49716101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 527 - 559
Target Start/End: Complemental strand, 53671640 - 53671608
Alignment:
Q  527 ttgaaaattatgcattcaatgtcttaaaagttt 559  Q
    ||||||||| |||||||||||||||||||||||    
T  53671640 ttgaaaattgtgcattcaatgtcttaaaagttt 53671608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 5e-33; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 468 - 640
Target Start/End: Complemental strand, 26653459 - 26653287
Alignment:
Q  468 gaaatattaacttgtgcccttgatacataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagtt 567  Q
    ||||| ||||||||||| | ||   ||||| ||| |||||||| |||| || ||| |||||||||||| | |||||||||||||||||||||||||||||    
T  26653459 gaaatgttaacttgtgctcctgtggcataaattaagaagctaaatgtaaaacttttttcttgaaaattgtacattcaatgtcttaaaagtttcaaaagtt 26653360  T
Q  568 atattttcaacataaaatttatttttaatttccattttaatctacttaacttatgtcataaagacacaagtta 640  Q
    |||||||||| || |||||||||||||||  |||| |||| ||| ||||||| || | ||||| |||||||||    
T  26653359 atattttcaatatgaaatttatttttaatccccatcttaagctatttaacttgtgccctaaaggcacaagtta 26653287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 468 - 640
Target Start/End: Complemental strand, 26759427 - 26759255
Alignment:
Q  468 gaaatattaacttgtgcccttgatacataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagtt 567  Q
    ||||| ||||||||||| | ||   ||||| ||| |||||||| |||| || ||| |||||||||||| | |||||||||||||||||||||||||||||    
T  26759427 gaaatgttaacttgtgctcctgtggcataaattaagaagctaaatgtaaaacttttttcttgaaaattgtacattcaatgtcttaaaagtttcaaaagtt 26759328  T
Q  568 atattttcaacataaaatttatttttaatttccattttaatctacttaacttatgtcataaagacacaagtta 640  Q
    |||||||||| || |||||||||||||||  |||| |||| ||| ||||||| || | ||||| |||||||||    
T  26759327 atattttcaatatgaaatttatttttaatccccatcttaagctatttaacttgtgccctaaaggcacaagtta 26759255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 468 - 644
Target Start/End: Complemental strand, 15528498 - 15528322
Alignment:
Q  468 gaaatattaacttgtgcccttgatacataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagtt 567  Q
    ||||| ||||||||||  ||||   |||||||||  || |||| |||||||| || |||||| || || || ||| |||||||||||||||  |||||||    
T  15528498 gaaatgttaacttgtgttcttggggcataagttaaaaaactaaatgtagaagatttttcttggaatttgtgaatttaatgtcttaaaagttgtaaaagtt 15528399  T
Q  568 atattttcaacataaaatttatttttaatttccattttaatctacttaacttatgtcataaagacacaagttaacat 644  Q
    |||||||||||| ||||||||||||||||||| |||||||||| |||||||| || | | | | |||||||||||||    
T  15528398 atattttcaacacaaaatttatttttaatttctattttaatctccttaacttgtgcccttagggcacaagttaacat 15528322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 468 - 644
Target Start/End: Original strand, 12622503 - 12622677
Alignment:
Q  468 gaaatattaacttgtgcccttgatacataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagtt 567  Q
    ||||| |||||||||||||||||  ||||||||| | | ||||  |||||||||| || ||| ||||| ||||||||||||||| ||||||||||||||     
T  12622503 gaaatgttaacttgtgcccttgaggcataagttaaggaactaaaagtagaagtttttttttgtaaattgtgcattcaatgtcttgaaagtttcaaaagt- 12622601  T
Q  568 atattttcaacataaaatttatttttaatttccattttaatctacttaacttatgtcataaagacacaagttaacat 644  Q
     ||||||||||||||||||||||  | | ||| |||||||  | |||||||| |  | ||||| |||||||||||||    
T  12622602 -tattttcaacataaaatttattacttaattctattttaagttccttaacttcttccctaaaggcacaagttaacat 12622677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 494 - 624
Target Start/End: Complemental strand, 29384059 - 29383930
Alignment:
Q  494 ataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttattttt 593  Q
    |||||||| ||||  || |||||||| || |||||| ||  ||||||||||||||||||||||||  |||||||||| |||||| |||||||||| ||||    
T  29384059 ataagttaagaagacaaatgtagaaggtttttcttggaacctatgcattcaatgtcttaaaagttggaaaagttatactttcaatataaaattta-tttt 29383961  T
Q  594 aatttccattttaatctacttaacttatgtc 624  Q
    ||||| |||||||| || |||||||| ||||    
T  29383960 aattttcattttaaactccttaacttgtgtc 29383930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 531 - 607
Target Start/End: Original strand, 6797078 - 6797154
Alignment:
Q  531 aaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaa 607  Q
    ||||||| |||||||||  |||||||||||||||||| ||||||||| |||||| ||| ||| ||||||||||||||    
T  6797078 aaattatacattcaatgcattaaaagtttcaaaagttgtattttcaatataaaagttactttgaatttccattttaa 6797154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 468 - 644
Target Start/End: Complemental strand, 11753117 - 11752935
Alignment:
Q  468 gaaatattaacttgtgcccttgatacataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagtt 567  Q
    ||||| ||||||||||||||||  |||||||||| ||| | || | || ||  || || ||| || || |||||||||||||||||| ||| ||||||||    
T  11753117 gaaatgttaacttgtgcccttgggacataagttaagaaaccaaatataaaaagtttttattggaatttgtgcattcaatgtcttaaatgttgcaaaagtt 11753018  T
Q  568 atattttcaacata------aaatttatttttaatttccattttaatctacttaacttatgtcataaagacacaagttaacat 644  Q
    ||| ||| || |||      ||||||||||||||||| |||||||| || |||||||| || | | | |||||||||||||||    
T  11753017 atacttttaatataccagtaaaatttatttttaattttcattttaaactccttaacttgtgcccttaggacacaagttaacat 11752935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 484 - 592
Target Start/End: Original strand, 23652615 - 23652725
Alignment:
Q  484 cccttgatacataagttacgaagctaattgtagaagtttattct--tgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacata 581  Q
    |||||||  ||||||||| ||||| || ||||||||||| || |  |  ||||| |||||||||| |||||||||||||||||||||| ||||||  |||    
T  23652615 cccttgaggcataagttaagaagccaaatgtagaagttttttttattttaaattgtgcattcaatatcttaaaagtttcaaaagttattttttcagtata 23652714  T
Q  582 aaatttatttt 592  Q
    ||||| |||||    
T  23652715 aaattaatttt 23652725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 512 - 605
Target Start/End: Complemental strand, 2444138 - 2444045
Alignment:
Q  512 tgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccatttt 605  Q
    |||||||| || || ||| || ||| ||||| |||||||||||| || ||||||||||| ||| || |||||||| |||||| |||||||||||    
T  2444138 tgtagaagattttttttggaatttaggcatttaatgtcttaaaaattgcaaaagttatacttttaatataaaattgattttttatttccatttt 2444045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 531 - 605
Target Start/End: Original strand, 28053481 - 28053555
Alignment:
Q  531 aaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccatttt 605  Q
    |||| ||||||| ||| | ||||||||||||||| ||||||||| || |||||| |||||||| ||||| |||||    
T  28053481 aaatcatgcatttaatattttaaaagtttcaaaacttatattttaaatataaaacttattttttatttctatttt 28053555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 524 - 607
Target Start/End: Original strand, 1875120 - 1875201
Alignment:
Q  524 ttcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaa 607  Q
    |||||||||| | || ||| ||| | ||||||||||||||||||||||||| || |||||| ||||| |||  |||||||||||    
T  1875120 ttcttgaaaaatgtgtatttaatattttaaaagtttcaaaagttatatttttaatataaaacttattctta--ttccattttaa 1875201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 532 - 607
Target Start/End: Original strand, 13397146 - 13397222
Alignment:
Q  532 aattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatt-tttaatttccattttaa 607  Q
    |||| |||||| | |||||||||||||| ||||||||||||||||| || ||| ||||| ||| ||||| |||||||    
T  13397146 aattgtgcatttagtgtcttaaaagttttaaaagttatattttcaatattaaacttattattttatttctattttaa 13397222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 531 - 622
Target Start/End: Original strand, 28637584 - 28637675
Alignment:
Q  531 aaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaatctacttaacttatg 622  Q
    |||||||| ||||||  |||||||| |||||||||| || ||||||| ||| |||||||| || | ||| |||||||  | |||||||||||    
T  28637584 aaattatgtattcaaaatcttaaaaatttcaaaagtcatcttttcaatatataatttattatttaattctattttaagttccttaacttatg 28637675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 469 - 595
Target Start/End: Original strand, 19776688 - 19776813
Alignment:
Q  469 aaatattaacttgtgcccttgatacataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagtta 568  Q
    |||| ||||||||||| |||||  | ||||||| ||| | || | ||||||||| |||||  ||||| |||||| ||  ||  |||||||| ||||||||    
T  19776688 aaatgttaacttgtgcacttgag-cgtaagttaagaaccaaaatatagaagttttttcttccaaattgtgcatttaacatcaaaaaagttttaaaagtta 19776786  T
Q  569 tattttcaacataaaatttatttttaa 595  Q
    |||||| || ||||||||| |||||||    
T  19776787 tatttttaatataaaatttctttttaa 19776813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 8e-32; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 469 - 619
Target Start/End: Original strand, 8059901 - 8060051
Alignment:
Q  469 aaatattaacttgtgcccttgatacataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagtta 568  Q
    |||| |||||||||||||||||  ||||||||| ||| | || ||||||||||| | |||| ||||| ||||||||||||||||||||| ||||||||||    
T  8059901 aaatgttaacttgtgcccttgaggcataagttaagaaaccaaatgtagaagtttttgcttggaaattgtgcattcaatgtcttaaaagtctcaaaagtta 8060000  T
Q  569 tattttcaacataaaatttatttttaatttccattttaatctacttaactt 619  Q
    ||  || || |||||| |||||||| ||||||||||||| || ||||||||    
T  8060001 taaatttaatataaaacttattttttatttccattttaagctccttaactt 8060051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 493 - 619
Target Start/End: Original strand, 44328479 - 44328605
Alignment:
Q  493 cataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttt 592  Q
    ||||||||| ||||  || |||||||| || |||||| || || ||||||||||||||||||| || ||||||||||| ||| || ||||||||||||||    
T  44328479 cataagttaagaagacaaatgtagaaggtttttcttggaacttgtgcattcaatgtcttaaaaattgcaaaagttatacttttaatataaaatttatttt 44328578  T
Q  593 taatttccattttaatctacttaactt 619  Q
    ||||||||||||||| || ||||||||    
T  44328579 taatttccattttaaactccttaactt 44328605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 537 - 624
Target Start/End: Complemental strand, 24456418 - 24456331
Alignment:
Q  537 tgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaatctacttaacttatgtc 624  Q
    |||||||||||| ||||||||| ||||||||||| |||||| ||||||||||||| ||||||||||||||| || |||||||||||||    
T  24456418 tgcattcaatgttttaaaagttgcaaaagttatactttcaatataaaatttatttataatttccattttaagctccttaacttatgtc 24456331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 467 - 604
Target Start/End: Complemental strand, 36604200 - 36604061
Alignment:
Q  467 tgaaatattaacttgtgcccttgatacataagttacgaagctaattgtagaag--tttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaa 564  Q
    |||||| ||||||||| ||||| |  ||||| ||| |||| ||| ||||||||  ||| || ||  ||||| |||||||||| |||||||||||||| ||    
T  36604200 tgaaatgttaacttgtaccctttaagcataaattaagaagataaatgtagaaggttttttttttttaaattgtgcattcaatatcttaaaagtttcagaa 36604101  T
Q  565 gttatattttcaacataaaatttatttttaatttccattt 604  Q
     |||||||||||| ||||||||||||||||||||| ||||    
T  36604100 attatattttcaatataaaatttatttttaatttctattt 36604061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 527 - 619
Target Start/End: Original strand, 11599638 - 11599730
Alignment:
Q  527 ttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaatctacttaactt 619  Q
    ||||||||| |||||| |||||||||||||||| ||||||||| |||| || | ||||||||| ||||| ||| ||||||| || ||||||||    
T  11599638 ttgaaaattgtgcatttaatgtcttaaaagtttgaaaagttatctttttaataaaaaatttatatttaaattctattttaagcttcttaactt 11599730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 512 - 574
Target Start/End: Original strand, 12733783 - 12733845
Alignment:
Q  512 tgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatatttt 574  Q
    ||||||||||| |||||||||  |||||||| |||||||||||||||||||||||||| ||||    
T  12733783 tgtagaagttttttcttgaaacatatgcattaaatgtcttaaaagtttcaaaagttatctttt 12733845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 534 - 623
Target Start/End: Original strand, 43108249 - 43108338
Alignment:
Q  534 ttatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaatctacttaacttatgt 623  Q
    |||||||||| |||||||||||||| |||||||||   ||| || || ||| |||||||||||||  ||||||| || ||||||||||||    
T  43108249 ttatgcattctatgtcttaaaagttgcaaaagttaaccttttaatatgaaaattatttttaatttttattttaaactccttaacttatgt 43108338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 468 - 568
Target Start/End: Complemental strand, 8753391 - 8753291
Alignment:
Q  468 gaaatattaacttgtgcccttgatacataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagtt 567  Q
    ||||| |||||||||||||| ||  ||||||||| ||| |||| |||||||  || ||||| ||| || | |||||||||||| ||||||| ||||||||    
T  8753391 gaaatgttaacttgtgccctcgaggcataagttaagaaactaaatgtagaatgtttttcttaaaacttgtacattcaatgtctcaaaagttgcaaaagtt 8753292  T
Q  568 a 568  Q
    |    
T  8753291 a 8753291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 528 - 593
Target Start/End: Original strand, 43798733 - 43798798
Alignment:
Q  528 tgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttattttt 593  Q
    ||||| || |||||||||||||| ||||||| ||||  ||| |||||||| |||||||||||||||    
T  43798733 tgaaacttgtgcattcaatgtctcaaaagttgcaaatattaaattttcaatataaaatttattttt 43798798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 524 - 644
Target Start/End: Complemental strand, 18184490 - 18184370
Alignment:
Q  524 ttcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaatctacttaacttatgt 623  Q
    ||||| ||| || |||||||||||  || |||||||||||||||||  ||| || || |||||||||| | | ||| ||||||| || |||||| | |||    
T  18184490 ttcttaaaagttgtgcattcaatgctttgaaagtttcaaaagttatcatttaaatattaaatttatttgttaattctattttaagctccttaacctgtgt 18184391  T
Q  624 cataaagacacaagttaacat 644  Q
      ||||| |||||||||||||    
T  18184390 tctaaaggcacaagttaacat 18184370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 494 - 607
Target Start/End: Original strand, 17694690 - 17694800
Alignment:
Q  494 ataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttattttt 593  Q
    |||||||| ||||  ||||||||||| || ||||| ||| || |||||| ||||||||||||||| | ||||||||| ||| |  ||  ||||| |||||    
T  17694690 ataagttaagaagacaattgtagaagatttttcttaaaacttctgcatttaatgtcttaaaagttac-aaagttatactttta--atttaattttttttt 17694786  T
Q  594 aatttccattttaa 607  Q
     |||||||||||||    
T  17694787 tatttccattttaa 17694800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 527 - 589
Target Start/End: Complemental strand, 18181789 - 18181727
Alignment:
Q  527 ttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttat 589  Q
    ||||||||| |||||||||||||||||||  || |||| |||| |||| || |||||||||||    
T  18181789 ttgaaaattgtgcattcaatgtcttaaaaaattaaaaacttattttttaaatataaaatttat 18181727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 548 - 590
Target Start/End: Complemental strand, 40819388 - 40819346
Alignment:
Q  548 tcttaaaagtttcaaaagttatattttcaacataaaatttatt 590  Q
    |||||||||||||||| ||||| ||||||| ||||||||||||    
T  40819388 tcttaaaagtttcaaatgttattttttcaatataaaatttatt 40819346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 559
Target Start/End: Complemental strand, 43393401 - 43393356
Alignment:
Q  514 tagaagtttattcttgaaaattatgcattcaatgtcttaaaagttt 559  Q
    |||||||||||||||| ||||  |||||||||| ||||||||||||    
T  43393401 tagaagtttattcttggaaatgttgcattcaatatcttaaaagttt 43393356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 8e-29; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 469 - 642
Target Start/End: Complemental strand, 4228955 - 4228782
Alignment:
Q  469 aaatattaacttgtgcccttgatacataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagtta 568  Q
    |||| |||||||||| | |||| ||||||||||  |||  || ||||||| ||| || ||| || || |||||||||| ||||||||||  |||||||||    
T  4228955 aaatgttaacttgtgtctttgagacataagttaataagaaaaatgtagaattttttttttggaacttgtgcattcaatatcttaaaagtaacaaaagtta 4228856  T
Q  569 tattttcaacataaaatttatttttaatttccattttaatctacttaacttatgtcataaagacacaagttaac 642  Q
    || |||||| ||||||||||||||||| || |||||||| || |||||||| |||| ||||| |||||||||||    
T  4228855 tactttcaatataaaatttatttttaaatttcattttaaactccttaacttgtgtcttaaaggcacaagttaac 4228782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 468 - 619
Target Start/End: Complemental strand, 50170631 - 50170480
Alignment:
Q  468 gaaatattaacttgtgcccttgatacataagttacgaagctaattgtagaagtttatt-cttgaaaattatgcattcaatgtcttaaaagtttcaaaagt 566  Q
    ||||| ||||||||||||||||   ||||||||| ||| | || ||||||||||| || |||| ||||| ||||||||||||||||||| ||||||||||    
T  50170631 gaaatgttaacttgtgcccttggggcataagttaagaaaccaaatgtagaagtttttttcttggaaattgtgcattcaatgtcttaaaaatttcaaaagt 50170532  T
Q  567 tatattttcaacataaaatttatttttaatttccattttaatctacttaactt 619  Q
    ||| ||||||| ||||||||||||||| | ||| ||||||| || ||||||||    
T  50170531 tatcttttcaatataaaatttatttttta-ttctattttaagctccttaactt 50170480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 474 - 621
Target Start/End: Original strand, 16277560 - 16277706
Alignment:
Q  474 ttaacttgtgcccttgatacataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattt 573  Q
    ||||||| ||||||||| ||||||||||  |||  || | || |||||| || ||  ||||| ||||||||||| |||||||||||||||||||||||||    
T  16277560 ttaacttatgcccttga-acataagttaaaaagtcaaatataaaagtttttttttagaaattgtgcattcaatgccttaaaagtttcaaaagttatattt 16277658  T
Q  574 tcaacataaaatttatttttaatttccattttaatctacttaacttat 621  Q
    | || |||||||||||||| ||||||||||| || || | ||||||||    
T  16277659 ttaatataaaatttattttaaatttccatttcaagctccctaacttat 16277706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 469 - 622
Target Start/End: Complemental strand, 31197947 - 31197793
Alignment:
Q  469 aaatattaacttgtgcccttgatacataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagtta 568  Q
    |||| ||||||||| || |||| |||||||||| ||| |||| ||||||| ||| || || |||  | ||||||||||||||||||||||  ||| ||||    
T  31197947 aaatgttaacttgtacctttgagacataagttaagaaactaaatgtagaatttttttttttaaacgtgtgcattcaatgtcttaaaagttgtaaacgtta 31197848  T
Q  569 tattttcaacat-aaaatttatttttaatttccattttaatctacttaacttatg 622  Q
    || |||||| || |||||||||||||||||| |||||||| || ||||| |||||    
T  31197847 tactttcaatataaaaatttatttttaattttcattttaaactccttaatttatg 31197793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 537 - 619
Target Start/End: Complemental strand, 44543115 - 44543033
Alignment:
Q  537 tgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaatctacttaactt 619  Q
    |||||||||| |||||||| |||| |||||||||||||||| |||||||||||||||||||| |||||||| ||| |||||||    
T  44543115 tgcattcaatctcttaaaaatttctaaagttatattttcaatataaaatttatttttaattttcattttaaactatttaactt 44543033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 474 - 644
Target Start/End: Complemental strand, 11380319 - 11380151
Alignment:
Q  474 ttaacttgtgcccttgatacataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattt 573  Q
    ||||||| |||||||  | ||||||||| ||||  || |||||||  || ||||||||| || |||||||||| ||||||| ||||||||||||||| ||    
T  11380319 ttaacttatgccctttgtgcataagttaagaagtcaaatgtagaaagtttttcttgaaacttgtgcattcaatatcttaaatgtttcaaaagttatactt 11380220  T
Q  574 tcaacataaaatttatttttaatttccattttaatctacttaacttatgtcataaagacacaagttaacat 644  Q
    |||  ||| ||||| ||||||||||| ||||||| || |||||||| || | ||| | || ||||||||||    
T  11380219 tca--atataatttttttttaatttcaattttaaactccttaacttgtgccctaagggcataagttaacat 11380151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 468 - 607
Target Start/End: Original strand, 37662921 - 37663059
Alignment:
Q  468 gaaatattaacttgtgcccttgatacataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagtt 567  Q
    ||||| ||||||||||||||||   ||||||||| ||||  || ||| |||| || || ||| || || || ||||||| |||||||||||  |||||||    
T  37662921 gaaatgttaacttgtgcccttggggcataagttaagaaggaaaatgt-gaaggttttttttggaacttttgtattcaatatcttaaaagttgtaaaagtt 37663019  T
Q  568 atattttcaacataaaatttatttttaatttccattttaa 607  Q
    ||| |||| | |||||||||||||||||||||||||||||    
T  37663020 atactttcgatataaaatttatttttaatttccattttaa 37663059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 534 - 633
Target Start/End: Complemental strand, 44544826 - 44544727
Alignment:
Q  534 ttatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaatctacttaacttatgtcataaagaca 633  Q
    ||||||||| |||||||||||| ||  |||| ||||||||| || |||||||||||||||||||| |||||||| || ||||| || |||| ||||||||    
T  44544826 ttatgcatttaatgtcttaaaaattgtaaaaattatattttaaatataaaatttatttttaattttcattttaagctccttaatttgtgtcctaaagaca 44544727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 537 - 643
Target Start/End: Original strand, 53200895 - 53201001
Alignment:
Q  537 tgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaatctacttaacttatgtcataaagacacaa 636  Q
    |||||||||||||||||||||| ||||||||| | ||| || || |||||||||||||||||| ||||||| ||  ||||||| |||| ||||  |||||    
T  53200895 tgcattcaatgtcttaaaagttgcaaaagttacacttttaatatcaaatttatttttaatttctattttaagcttattaacttgtgtcgtaaaagcacaa 53200994  T
Q  637 gttaaca 643  Q
     ||||||    
T  53200995 attaaca 53201001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 469 - 644
Target Start/End: Complemental strand, 4239261 - 4239081
Alignment:
Q  469 aaatattaacttgtgcccttgatacataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagtta 568  Q
    |||| |||||||||| | ||||  |||||||||  |||  || |||||||  || |||||| || || ||||||||||| |||||||||  |||||||||    
T  4239261 aaatgttaacttgtgtctttgaggcataagttaataagaaaaatgtagaaagtttttcttggaacttgtgcattcaatgccttaaaagtaacaaaagtta 4239162  T
Q  569 tattttcaaca-----taaaatttatttttaatttccattttaatctacttaacttatgtcataaagacacaagttaacat 644  Q
    || |||||| |     |||||||||||||||| || |||||||| || ||||||||||||| ||| |  ||||||||||||    
T  4239161 tactttcaatatacagtaaaatttatttttaaatttcattttaagctccttaacttatgtcttaagggtacaagttaacat 4239081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 524 - 607
Target Start/End: Complemental strand, 54261898 - 54261815
Alignment:
Q  524 ttcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaa 607  Q
    ||||||||| || |||||||||| ||||||||||| ||||||||| | ||| || |||||||||||||||||||| | ||||||    
T  54261898 ttcttgaaacttgtgcattcaatatcttaaaagttgcaaaagttagacttttaatataaaatttatttttaattttctttttaa 54261815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 508 - 605
Target Start/End: Original strand, 53092401 - 53092498
Alignment:
Q  508 taattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccatttt 605  Q
    |||||||| |||||| ||||| |||||| || ||| ||||| ||||||||||||||||| || ||||||| |||||| || ||||| | |||||||||    
T  53092401 taattgtaaaagttttttcttaaaaattgtgtatttaatgtattaaaagtttcaaaagtcatcttttcaatataaaacttgttttttaattccatttt 53092498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 513 - 617
Target Start/End: Complemental strand, 11364895 - 11364792
Alignment:
Q  513 gtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaatctac 612  Q
    ||||||| || || |||||| || |||||||||| ||||||||||| ||||||||||| |||||| || || ||| ||||||||||| ||||||| || |    
T  11364895 gtagaaggttttttttgaaacttgtgcattcaatatcttaaaagttccaaaagttatactttcaatat-aattttttttttaatttcaattttaaactcc 11364797  T
Q  613 ttaac 617  Q
    |||||    
T  11364796 ttaac 11364792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 531 - 594
Target Start/End: Original strand, 46010384 - 46010447
Alignment:
Q  531 aaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttattttta 594  Q
    |||||||||||||||| |||||||| ||| |||||||||||||| || |||||| |||||||||    
T  46010384 aaattatgcattcaatatcttaaaaattttaaaagttatatttttaatataaaacttattttta 46010447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 539 - 590
Target Start/End: Original strand, 48953936 - 48953987
Alignment:
Q  539 cattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatt 590  Q
    |||||||||| |||||||||||||||||||| ||||||| ||||||||||||    
T  48953936 cattcaatgttttaaaagtttcaaaagttatcttttcaatataaaatttatt 48953987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 513 - 599
Target Start/End: Complemental strand, 39956248 - 39956162
Alignment:
Q  513 gtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttc 599  Q
    |||||| |||||| ||||||||| ||||||||||||| | |||  || |||| |||||||||||| ||||||||||| ||| |||||    
T  39956248 gtagaaatttatttttgaaaattgtgcattcaatgtcatgaaaagttaaaaacttatattttcaatataaaatttatgttttatttc 39956162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 525 - 622
Target Start/End: Original strand, 3382635 - 3382732
Alignment:
Q  525 tcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaatctacttaacttatg 622  Q
    ||||| ||||| ||||||||||   |||||| ||||||||||| ||||||||| |||||| ||  ||| ||||||||||| || || |||||||||||    
T  3382635 tcttggaaattgtgcattcaatacattaaaaatttcaaaagttgtattttcaatataaaagttgctttgaatttccatttcaaactccttaacttatg 3382732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 53511635 - 53511683
Alignment:
Q  39 tataattatttttcatttttatcatttgtgactaattttaattgattat 87  Q
    |||||| |||||||||||||||||||||| ||||||||||||| |||||    
T  53511635 tataatcatttttcatttttatcatttgtcactaattttaattaattat 53511683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 531 - 607
Target Start/End: Complemental strand, 9261018 - 9260944
Alignment:
Q  531 aaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaa 607  Q
    ||||| |||||||||| | |||||||||| |||||||||||| |||  ||| ||||| ||||||||||| |||||||    
T  9261018 aaattgtgcattcaatattttaaaagttttaaaagttatattatca--atataatttttttttaatttctattttaa 9260944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 118
Target Start/End: Original strand, 3253634 - 3253713
Alignment:
Q  39 tataattatttttcatttttatcatttgtgactaattttaattgattatatagtgaaaaaattagtatattataataggt 118  Q
    ||||||| |||||||  |||||||||| | ||||| ||||| | ||||| || ||| |||||||||||| ||||||||||    
T  3253634 tataattgtttttcaactttatcattttttactaactttaactaattatgtaatgacaaaattagtatactataataggt 3253713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 645
Target Start/End: Complemental strand, 50303069 - 50302950
Alignment:
Q  526 cttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaatctacttaacttatgtca 625  Q
    |||| ||||| ||||||||   |||||||||||  |||| |||||||||||| | || ||||||| ||  |||| |||||||  || ||| |||||| |     
T  50303069 cttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattgtttgtttctattttaagatatttatcttatgccc 50302970  T
Q  626 taaagacacaagttaacatt 645  Q
    | ||||||||||||||||||    
T  50302969 ttaagacacaagttaacatt 50302950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 517 - 557
Target Start/End: Complemental strand, 26042325 - 26042285
Alignment:
Q  517 aagtttattcttgaaaattatgcattcaatgtcttaaaagt 557  Q
    |||||| ||||||||||| ||||||||||| ||||||||||    
T  26042325 aagttttttcttgaaaataatgcattcaatatcttaaaagt 26042285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 3e-28; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 468 - 644
Target Start/End: Original strand, 24393476 - 24393652
Alignment:
Q  468 gaaatattaacttgtgcccttgatacataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagtt 567  Q
    ||||| ||||||||||| | ||  |||||| ||| ||||  || |||||||| || ||||||||| |||| |||||||||||||||||||| ||||| ||    
T  24393476 gaaattttaacttgtgctcgtgggacataaattaagaaggcaaatgtagaaggtttttcttgaaacttatccattcaatgtcttaaaagttgcaaaaatt 24393575  T
Q  568 atattttcaacataaaatttatttttaatttccattttaatctacttaacttatgtcataaagacacaagttaacat 644  Q
    ||| |||||| |||||||||||||||||||| |||||||| ||  ||||||| |  | ||| | |||||||||||||    
T  24393576 atactttcaatataaaatttatttttaattttcattttaagctcattaacttgtaccctaagggcacaagttaacat 24393652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 514 - 618
Target Start/End: Complemental strand, 46923718 - 46923614
Alignment:
Q  514 tagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaatctact 613  Q
    ||||||||| |||||||||||| |||||| ||||| ||||||||||||||||||||||||| || | |||||||||||||||||| |||||||| || ||    
T  46923718 tagaagttttttcttgaaaattgtgcatttaatgttttaaaagtttcaaaagttatattttgaatacaaaatttatttttaattttcattttaagctcct 46923619  T
Q  614 taact 618  Q
    |||||    
T  46923618 taact 46923614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 508 - 619
Target Start/End: Original strand, 39927674 - 39927784
Alignment:
Q  508 taattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaa 607  Q
    ||||||||||||||| || |||||||||||||||| | | |||||||| |||||||||||||||||| || ||||||||||||||||||||| |||||||    
T  39927674 taattgtagaagtttttttttgaaaattatgcattta-tatcttaaaaatttcaaaagttatatttttaatataaaatttatttttaatttctattttaa 39927772  T
Q  608 tctacttaactt 619  Q
     || ||||||||    
T  39927773 gctccttaactt 39927784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 534 - 644
Target Start/End: Complemental strand, 43131994 - 43131884
Alignment:
Q  534 ttatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaatctacttaacttatgtcataaagaca 633  Q
    ||||||||||||| |||||||| || ||||||||||| |||||| |||||||||||||| |||||||||||||| || |||||||| || | ||| | ||    
T  43131994 ttatgcattcaatatcttaaaaattgcaaaagttatactttcaatataaaatttattttcaatttccattttaaactccttaacttgtgccctaagggca 43131895  T
Q  634 caagttaacat 644  Q
    |||||||||||    
T  43131894 caagttaacat 43131884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 495 - 607
Target Start/End: Original strand, 2456725 - 2456840
Alignment:
Q  495 taagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagtta---tattttcaacataaaatttattt 591  Q
    ||||||| |||| ||| | || |||||| |||||||||||||  |||||||| | |||||||||||||||||||   ||||||||| ||||||||| |||    
T  2456725 taagttaagaagttaaatataaaagttttttcttgaaaattacacattcaatatattaaaagtttcaaaagttatactattttcaatataaaatttgttt 2456824  T
Q  592 ttaatttccattttaa 607  Q
    |||||||| |||||||    
T  2456825 ttaatttctattttaa 2456840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 527 - 640
Target Start/End: Complemental strand, 43093693 - 43093580
Alignment:
Q  527 ttgaaaattatgcattcaatgtcttaaaagtt-tcaaaagttatattttcaacataaaatttatttttaatttccattttaatctacttaacttatgtca 625  Q
    |||||| ||||| ||||||| ||||||||||| | |||| |||||||||||| |||||||| |||||||||||||||||||| || |||||||| || |     
T  43093693 ttgaaatttatgtattcaatatcttaaaagttgtaaaaatttatattttcaaaataaaatt-atttttaatttccattttaaacttcttaacttgtgact 43093595  T
Q  626 taaagacacaagtta 640  Q
    ||| | |||||||||    
T  43093594 taagggcacaagtta 43093580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 551 - 619
Target Start/End: Original strand, 26776142 - 26776210
Alignment:
Q  551 taaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaatctacttaactt 619  Q
    |||||||| ||||||||||| |||||| ||||||||||||||||||||| ||||||| || ||||||||    
T  26776142 taaaagttacaaaagttatactttcaatataaaatttatttttaatttctattttaagctccttaactt 26776210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 540 - 619
Target Start/End: Original strand, 8240731 - 8240810
Alignment:
Q  540 attcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaatctacttaactt 619  Q
    ||||||||| ||||||||||||||| ||||||||| || |||||| |||||||| |||| |||||||| || ||||||||    
T  8240731 attcaatgtattaaaagtttcaaaaattatattttaaatataaaacttattttttattttcattttaagctccttaactt 8240810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 476 - 590
Target Start/End: Complemental strand, 31765507 - 31765393
Alignment:
Q  476 aacttgtgcccttgatacataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttc 575  Q
    |||||||||| |||   ||||||||| ||| | || ||||||||||| |||||| ||||| | |||   ||||||||||||||||||||||||| |||||    
T  31765507 aacttgtgcctttggggcataagttaagaaaccaaatgtagaagttttttcttggaaattgtacatctgatgtcttaaaagtttcaaaagttatcttttc 31765408  T
Q  576 aacataaaatttatt 590  Q
    || |||||| |||||    
T  31765407 aatataaaacttatt 31765393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 492 - 593
Target Start/End: Complemental strand, 3399485 - 3399384
Alignment:
Q  492 acataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttattt 591  Q
    |||||||||| |||  ||| | || |||||| || ||| ||||| |||||| | ||| |||||| ||||||||||||| ||||||| |||||||||||||    
T  3399485 acataagttaagaaattaaatataaaagttttttgttggaaattttgcatttattgtattaaaaatttcaaaagttatcttttcaatataaaatttattt 3399386  T
Q  592 tt 593  Q
    ||    
T  3399385 tt 3399384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 468 - 577
Target Start/End: Original strand, 40720367 - 40720476
Alignment:
Q  468 gaaatattaacttgtgcccttgatacataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagtt 567  Q
    ||||| ||||||||||| ||||   ||||| ||| |||||||| | | ||| |||  | |||||||||||||||| ||| |||||||||||| |||| ||    
T  40720367 gaaatgttaacttgtgcgcttggggcataaattaagaagctaaatatggaacttttattttgaaaattatgcatttaatatcttaaaagttttaaaaatt 40720466  T
Q  568 atattttcaa 577  Q
    ||||||||||    
T  40720467 atattttcaa 40720476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 468 - 588
Target Start/End: Complemental strand, 6271435 - 6271315
Alignment:
Q  468 gaaatattaacttgtgcccttgatacataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagtt 567  Q
    ||||| ||||||| ||||||||   ||||||||| |||   || |||||||  || ||||| ||| || ||||||||||  |||||||||| ||||||||    
T  6271435 gaaatgttaacttatgcccttggggcataagttaagaaagcaaatgtagaaagtttttcttaaaacttgtgcattcaatagcttaaaagttgcaaaagtt 6271336  T
Q  568 atattttcaacataaaattta 588  Q
    ||| |||||| ||||||||||    
T  6271335 atactttcaatataaaattta 6271315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 503 - 644
Target Start/End: Complemental strand, 16831711 - 16831570
Alignment:
Q  503 gaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccat 602  Q
    |||||||| |||| || |||||| ||  ||||| |||||||||| |||| |||  || |||| |||||||||||| | |||| |||| ||| ||||| ||    
T  16831711 gaagctaaatgtaaaaatttatttttagaaattgtgcattcaatatcttgaaaagttaaaaacttatattttcaatacaaaacttatgttttatttctat 16831612  T
Q  603 tttaatctacttaacttatgtcataaagacacaagttaacat 644  Q
    ||| |  | |||||||| || | ||| |||||||||||||||    
T  16831611 ttttacatccttaacttgtgccctaaggacacaagttaacat 16831570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 539 - 616
Target Start/End: Original strand, 46875227 - 46875301
Alignment:
Q  539 cattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaatctacttaa 616  Q
    ||||||||||||||||| ||| |||||||| ||||| || |||||| ||||||   ||||||||||||| || |||||    
T  46875227 cattcaatgtcttaaaaatttaaaaagttacatttttaatataaaacttattt---atttccattttaagcttcttaa 46875301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 546 - 604
Target Start/End: Complemental strand, 6181675 - 6181618
Alignment:
Q  546 tgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattt 604  Q
    |||||||||||||||||||||||| ||||||| || ||| |||||||| ||||| ||||    
T  6181675 tgtcttaaaagtttcaaaagttatgttttcaatat-aaacttattttttatttcaattt 6181618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 530 - 644
Target Start/End: Complemental strand, 23845639 - 23845526
Alignment:
Q  530 aaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaatctacttaacttatgtcataaa 629  Q
    |||||| |||||| || ||||||||||||| |||| |||||||||||| ||||||  ||||||| | | | ||||||| ||  ||||||| || | |||     
T  23845639 aaaattgtgcatttaa-gtcttaaaagttttaaaaattatattttcaatataaaacatattttttaatactattttaagctttttaacttttgccctaac 23845541  T
Q  630 gacacaagttaacat 644  Q
    |||| ||||||||||    
T  23845540 gacataagttaacat 23845526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 539 - 644
Target Start/End: Complemental strand, 29994730 - 29994625
Alignment:
Q  539 cattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttat-ttttaatttccattttaatctacttaacttatgtcataaagacacaag 637  Q
    |||||| ||| |||||||||| |||| ||||||||||||    ||| |||| ||||||||||  ||||||| | |||||||||||||||||   ||||||    
T  29994730 cattcattgtattaaaagtttgaaaatttatattttcaatgctaaagttatcttttaatttcatttttaat-ttcttaacttatgtcataagagcacaag 29994632  T
Q  638 ttaacat 644  Q
    |||||||    
T  29994631 ttaacat 29994625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 540 - 607
Target Start/End: Complemental strand, 10227850 - 10227786
Alignment:
Q  540 attcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaa 607  Q
    ||||||||| ||||||||| ||||||||||| |||||| || |   || |||||||||||||||||||    
T  10227850 attcaatgttttaaaagttgcaaaagttataatttcaatatta---ttttttttaatttccattttaa 10227786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 537 - 570
Target Start/End: Complemental strand, 15137335 - 15137302
Alignment:
Q  537 tgcattcaatgtcttaaaagtttcaaaagttata 570  Q
    |||||||| |||||||||||||||||||||||||    
T  15137335 tgcattcattgtcttaaaagtttcaaaagttata 15137302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 492 - 593
Target Start/End: Original strand, 27645211 - 27645312
Alignment:
Q  492 acataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttattt 591  Q
    |||||||||| ||| |||| | ||||||||  ||||| |||||| |  || ||| ||| |||||| || ||||||||| || |||| |||||||||||||    
T  27645211 acataagttatgaaactaaatatagaagttctttcttaaaaattgtaaatacaacgtcataaaaggtttaaaagttattttatcaatataaaatttattt 27645310  T
Q  592 tt 593  Q
    ||    
T  27645311 tt 27645312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 5e-27; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 493 - 607
Target Start/End: Original strand, 22874218 - 22874332
Alignment:
Q  493 cataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttt 592  Q
    ||||||||| |||||||  |||||||||||  | ||||||||| |||||||||| | |||||| |||||||||||||||||| || ||||||||||||||    
T  22874218 cataagttaagaagctatatgtagaagttttattttgaaaattgtgcattcaattttttaaaaatttcaaaagttatatttttaatataaaatttatttt 22874317  T
Q  593 taatttccattttaa 607  Q
    |||||| ||||||||    
T  22874318 taattttcattttaa 22874332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 482 - 644
Target Start/End: Complemental strand, 33741770 - 33741603
Alignment:
Q  482 tgcccttgatacataagttacgaagctaattgtagaagtttattcttgaaaattatgcat----tcaatgtcttaaaagtttcaaaagttatattttcaa 577  Q
    ||||||||| |||||||||| ||||  || || ||||| || ||||||||| || |||||    ||||||| ||||||||| ||||||||||||||||||    
T  33741770 tgcccttgagacataagttaagaaggcaaatggagaaggtttttcttgaaagttgtgcataaattcaatgttttaaaagttgcaaaagttatattttcaa 33741671  T
Q  578 cataaaatttat-ttttaatttccattttaatctacttaacttatgtcataaagacacaagttaacat 644  Q
     ||||||||||| |||||||||||||||||| || |||||||| |  | | | |||||||||||||||    
T  33741670 tataaaatttattttttaatttccattttaaactccttaacttgttcccttatgacacaagttaacat 33741603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 468 - 644
Target Start/End: Complemental strand, 28735444 - 28735269
Alignment:
Q  468 gaaatattaacttgtgcccttgatacataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagtt 567  Q
    ||||| ||||||||||||||||    |||||||| ||||  || |||||||  || ||||||||| ||   |||||||||||||||||||| ||||||||    
T  28735444 gaaatgttaacttgtgcccttgggt-ataagttaagaagacaaatgtagaaagtttttcttgaaacttgcacattcaatgtcttaaaagttgcaaaagtt 28735346  T
Q  568 atattttcaacataaaatttatttttaatttccattttaatctacttaacttatgtcataaagacacaagttaacat 644  Q
    ||| |||||| ||| ||||| |||||||||||| |||||| || |||||||| || | ||| | |||||||||||||    
T  28735345 atagtttcaatatagaatttgtttttaatttcctttttaagctccttaacttgtgccctaagggcacaagttaacat 28735269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 493 - 605
Target Start/End: Complemental strand, 38870024 - 38869913
Alignment:
Q  493 cataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttt 592  Q
    ||||| ||| ||| |||| |||| |||||| ||||||||| || |||||||||| |||||||| || ||||||||||||||| || ||||||||||||||    
T  38870024 cataaattaagaaactaaatgtaaaagttttttcttgaaacttgtgcattcaatatcttaaaaattgcaaaagttatatttt-aatataaaatttatttt 38869926  T
Q  593 taatttccatttt 605  Q
    |||||||||||||    
T  38869925 taatttccatttt 38869913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 531 - 607
Target Start/End: Original strand, 25650484 - 25650561
Alignment:
Q  531 aaattatgcattcaatgtctta-aaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaa 607  Q
    ||||| |||||| ||||||||  |||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  25650484 aaattgtgcatttaatgtctttgaaagtttcaaaagttatatttttaatataaaatttatttttaatttccattttaa 25650561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 468 - 593
Target Start/End: Complemental strand, 40113103 - 40112978
Alignment:
Q  468 gaaatattaacttgtgcccttgatacataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagtt 567  Q
    ||||| ||||||||||||||||   ||||||||| ||||| |  ||||||||||| || ||| ||||| ||||||  |||||||||||| ||||||||||    
T  40113103 gaaatgttaacttgtgcccttggagcataagttaagaagccacgtgtagaagttttttattggaaattgtgcatttgatgtcttaaaagcttcaaaagtt 40113004  T
Q  568 atattttcaacataaaatttattttt 593  Q
    || ||||||| |||||| || |||||    
T  40113003 atcttttcaatataaaacttgttttt 40112978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 517 - 591
Target Start/End: Complemental strand, 15595089 - 15595016
Alignment:
Q  517 aagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttattt 591  Q
    |||||| ||||| |||||| |||||||||||||| |||||||||||||||||| ||||||| |||||||||||||    
T  15595089 aagttttttctttaaaattgtgcattcaatgtct-aaaagtttcaaaagttattttttcaatataaaatttattt 15595016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 527 - 624
Target Start/End: Original strand, 1866933 - 1867030
Alignment:
Q  527 ttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaatctacttaacttatgtc 624  Q
    |||||| || |||||||||| ||||||||||  ||||| ||||| ||| || ||||||||||||||||||||| |||||||  | |||||||||||||    
T  1866933 ttgaaatttgtgcattcaatatcttaaaagtggcaaaaattatacttttaatataaaatttatttttaatttctattttaagtttcttaacttatgtc 1867030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 124
Target Start/End: Complemental strand, 910825 - 910740
Alignment:
Q  39 tataattatttttcatttttatcatttgtgactaattttaattgattatatagtgaaaaaattagtatattataataggtcgataa 124  Q
    |||||| |||||||||||||||||||||  | ||||||||||| ||| |  ||||| ||||||| |||||||||||||||| ||||    
T  910825 tataatcatttttcatttttatcatttgctattaattttaattaattttgcagtgacaaaattattatattataataggtcaataa 910740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 513 - 584
Target Start/End: Original strand, 36491832 - 36491903
Alignment:
Q  513 gtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaa 584  Q
    |||||||||| | ||||||||||  ||||||||| |||| ||||||||||||||||| || |||||| ||||    
T  36491832 gtagaagtttctccttgaaaattgagcattcaatctcttgaaagtttcaaaagttattttatcaacaaaaaa 36491903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 468 - 597
Target Start/End: Original strand, 523627 - 523757
Alignment:
Q  468 gaaatattaacttgtgcccttgatacataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagtt 567  Q
    ||||| ||||||||||||||| |  || |||||  ||||| || | || || |||||| ||||||||| |||||| |||||||| |||| || |||| ||    
T  523627 gaaatgttaacttgtgcccttaaggcacaagtttagaagccaaatataaaaatttatttttgaaaattgtgcatttaatgtcttgaaaggttaaaaattt 523726  T
Q  568 atattttcaacataaaatttat-ttttaatt 597  Q
    |||||||||| | |||| |||| ||||||||    
T  523727 atattttcaatacaaaagttatgttttaatt 523757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 493 - 597
Target Start/End: Complemental strand, 10648009 - 10647905
Alignment:
Q  493 cataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttt 592  Q
    ||||||||| ||||  || ||||| || || || || |||||| |||||| |||||||||  |||||||||| |||||||||||| ||| ||||  ||||    
T  10648009 cataagttaagaagacaaatgtagtagatttttattaaaaattgtgcatttaatgtcttatcagtttcaaaaattatattttcaatatataattattttt 10647910  T
Q  593 taatt 597  Q
    |||||    
T  10647909 taatt 10647905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 527 - 605
Target Start/End: Original strand, 19521465 - 19521543
Alignment:
Q  527 ttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccatttt 605  Q
    ||||||||| |||||||||||| |||||||||| |||  || | ||||||| | |||| |||||||| | |||||||||    
T  19521465 ttgaaaattgtgcattcaatgtattaaaagtttaaaattttgtcttttcaatacaaaagttattttttaattccatttt 19521543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 544 - 582
Target Start/End: Original strand, 28041558 - 28041596
Alignment:
Q  544 aatgtcttaaaagtttcaaaagttatattttcaacataa 582  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  28041558 aatgtcttaaaagttacaaaagttatattttcaatataa 28041596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 567 - 644
Target Start/End: Original strand, 39743512 - 39743589
Alignment:
Q  567 tatattttcaacataaaatttatttttaatttccattttaatctacttaacttatgtcataaagacacaagttaacat 644  Q
    |||||||| || ||||||||||| ||||| ||  ||||||| || ||||||||||||  | || ||||||||||||||    
T  39743512 tatatttttaagataaaatttatgtttaaattttattttaaacttcttaacttatgttcttaaaacacaagttaacat 39743589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 527 - 606
Target Start/End: Original strand, 23263009 - 23263088
Alignment:
Q  527 ttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttat-ttttaatttccatttta 606  Q
    ||||||||| |||||||||||| |||||| ||| |||  |||||||||||| | |||| |||| |||||||| ||||||||    
T  23263009 ttgaaaattgtgcattcaatgtattaaaa-tttaaaattttatattttcaatacaaaagttatattttaattaccatttta 23263088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1173 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold1173
Description:

Target: scaffold1173; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 474 - 644
Target Start/End: Complemental strand, 256 - 87
Alignment:
Q  474 ttaacttgtgcccttgatacataagttacgaagctaattgtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattt 573  Q
    ||||||| |||||||  | ||||||||| ||||  || |||||||  || ||||||||| || |||||||||| ||||||||||||||||||||||| ||    
T  256 ttaacttatgccctttgtgcataagttaagaagtcaaatgtagaaagtttttcttgaaacttgtgcattcaatatcttaaaagtttcaaaagttatactt 157  T
Q  574 tcaacataaaatttatttttaatttccattttaatctacttaacttatgtcataaagacacaagttaacat 644  Q
    | || || || ||| ||||||||||| ||||||| || ||||||||||| | ||| |||| ||||||||||    
T  156 ttaatat-aattttttttttaatttcgattttaaactccttaacttatgccctaaggacataagttaacat 87  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 513 - 644
Target Start/End: Complemental strand, 45933 - 45802
Alignment:
Q  513 gtagaagtttattcttgaaaattatgcattcaatgtcttaaaagtttcaaaagttatattttcaacataaaatttatttttaatttccattttaatctac 612  Q
    |||||||||| |||||| |||||   ||||||||||||| ||| ||||||||||||| |||| |||||||||||||||  | | ||| |||||||  | |    
T  45933 gtagaagttttttcttggaaattgaacattcaatgtcttgaaattttcaaaagttatcttttgaacataaaatttattacttaattctattttaagttcc 45834  T
Q  613 ttaacttatgtcataaagacacaagttaacat 644  Q
    ||||||| |||  ||| | |||||||||||||    
T  45833 ttaacttctgttctaagggcacaagttaacat 45802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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