View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20684_low_3 (Length: 522)
Name: NF20684_low_3
Description: NF20684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20684_low_3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 168 - 522
Target Start/End: Original strand, 43439008 - 43439362
Alignment:
| Q |
168 |
ctgcaggaagaaggatgggttgtgtgcagggcatttaaaaagccaagtccaagtcacaggccaggttatgaaccatggtatagtaatcaacaacaaccac |
267 |
Q |
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| T |
43439008 |
ctgcaggaagaaggatgggttgtgtgcagggcatttaaaaagccaagtccaagtcacaggccaggttatgaaccatggtatagtaatcaacaacaaccac |
43439107 |
T |
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| Q |
268 |
agtttttcagagatgatcaaaactatgcaacaacaagacctttatcaattacagatattttgcatgaaaatcgtttactccttcaaaatccttcagctga |
367 |
Q |
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| T |
43439108 |
agtatttcagagatgatcaaaactatgcaacaacaagacctttatcaattacagatattttgcatgaaaatcgtttactccttcaaaatcctgcagctga |
43439207 |
T |
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| Q |
368 |
aggtacaagttttagtcacccctttagcaatgatcaacagtttctattaaaccaaaatgctgttattatggacaacaaacaactcattgaacttccacag |
467 |
Q |
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| T |
43439208 |
aggtacaagttttagtcacccctttagcaatgatcaacagtttctatcaaaccaaaatactcttgttatggacaacaaacaactcattgaacttccacag |
43439307 |
T |
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| Q |
468 |
ttagatagtccaacaacaagttttgcaatcaaagaaaatactcatcacaatggac |
522 |
Q |
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| T |
43439308 |
ttagatagtccaacaacaagttttgcaatcaaagaaaatactcatcacaatggac |
43439362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 43438858 - 43438950
Alignment:
| Q |
18 |
gcatgaatatagacatcaaacctctgaacatggtcctccacaggcaagttaattaattatttttgcattcaaatcttctttcatacttctact |
110 |
Q |
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| T |
43438858 |
gcatgaatatagacatcaaacctctgaacatggtcctccacaggcaagttaattatttttgcattaattcaaatcttctttcatacttctact |
43438950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 172 - 243
Target Start/End: Complemental strand, 8724908 - 8724837
Alignment:
| Q |
172 |
aggaagaaggatgggttgtgtgcagggcatttaaaaagccaagtccaagtcacaggccaggttatgaaccat |
243 |
Q |
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| T |
8724908 |
aggaagaaagataggttgtgtgcaaagcgtttaaaaagcctagtccaagtcacaggccaggttttgaaccat |
8724837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 8726853 - 8726789
Alignment:
| Q |
185 |
ggttgtgtgcagggcatttaaaaagccaagtccaagtcacaggccaggttatgaaccatggtata |
249 |
Q |
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| T |
8726853 |
ggttgtgttcagagcatttaaaaatcgtagtccaaatcagaggccaggttttgaaccatggtata |
8726789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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