View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20684_low_6 (Length: 436)
Name: NF20684_low_6
Description: NF20684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20684_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 20 - 421
Target Start/End: Original strand, 32502297 - 32502699
Alignment:
| Q |
20 |
ccctagactccagagatacctccaccacaaaatcaacataatccaattttacaatacaaaacttctatcttcaaaatgtnnnnnnnnnntataaaaatat |
119 |
Q |
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| T |
32502297 |
ccctagactccagagatacctccaccacaaaatcaacatgatccaattttacaatacaaaacttctatcttcaaaatgtataaaaaatatataaaaatat |
32502396 |
T |
|
| Q |
120 |
ttaatgcaacatcggtttaacatctatcagttctagttttgtgttacgattcatcatatgtgagagagtgtagcattatatttggtgaaactattttatt |
219 |
Q |
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| T |
32502397 |
ttaatgcaacatcggtttaacatctatcagttctagttttgtgttacgattcatcatatgtgagagagtgtagcattatatttggtgaaactattttatt |
32502496 |
T |
|
| Q |
220 |
taatagaaggagtctatattaacattcttaaaatatataag-nnnnnnnnnggtacaaaaaatatataagattttaaacatacatgtaacttcattgttg |
318 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32502497 |
taatagaaggagtccatattaacattcttaaaatatataagttttttttttggtacaaaaaatatataagattttaaacatacatgtaacttcattgttg |
32502596 |
T |
|
| Q |
319 |
ttacctatacatacatgagaaagttacatattcttccctgtctccaactttcaaggaatatgcattgtgtcaatgtatcaaatcctctcggcaagtcaaa |
418 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32502597 |
ttacctatacatacatgagaaagttacatattcttccttgtctccaactttcaaggaatatgcattgtgtcaatgtatcaaatcctctcggcaagtcaaa |
32502696 |
T |
|
| Q |
419 |
tat |
421 |
Q |
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| T |
32502697 |
tat |
32502699 |
T |
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