View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20685_high_16 (Length: 359)

Name: NF20685_high_16
Description: NF20685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20685_high_16
NF20685_high_16
[»] chr3 (17 HSPs)
chr3 (21-349)||(28053046-28053373)
chr3 (21-349)||(28063471-28063798)
chr3 (184-349)||(28147266-28147440)
chr3 (184-349)||(28081446-28081620)
chr3 (194-346)||(28131660-28131821)
chr3 (184-349)||(28511028-28511202)
chr3 (184-349)||(28482216-28482390)
chr3 (52-187)||(17746738-17746870)
chr3 (52-187)||(19048058-19048190)
chr3 (184-347)||(27974250-27974422)
chr3 (184-349)||(27918075-27918249)
chr3 (285-349)||(28183577-28183641)
chr3 (122-187)||(28183391-28183456)
chr3 (291-349)||(28002018-28002076)
chr3 (276-349)||(17746550-17746623)
chr3 (276-349)||(19047870-19047943)
chr3 (184-232)||(28183470-28183518)
[»] scaffold0257 (1 HSPs)
scaffold0257 (184-349)||(17052-17227)
[»] chr7 (1 HSPs)
chr7 (284-349)||(8693716-8693781)


Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 21 - 349
Target Start/End: Original strand, 28053046 - 28053373
Alignment:
Q  21 ctcgtgatatcggttgagcatatcaacgggtcattataaatttggacatggcgtgtctaagtctggagaaattgtgagtttgaatcaacactctagtata 120  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28053046 ctcgtgatatcggttgagcatatcaacgggtcattataaatt-ggacatggcgtgtctaagtctggagaaattgtgagtttgaatcaacactctagtata 28053144  T
Q  121 tatatcaaataacttcacagccttttattatctctattgtacttacaggacattgttattctcatttcacattcatttattgcaggaattgagtgggatt 220  Q
    ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28053145 tatctcaaataacttcacagctttttattatctctattgtacttacaggacattgttattctcatttcacattcatttattgcaggaattgagtgggatt 28053244  T
Q  221 gtggatcattttctcgctctgaagagactcgtggtaaagaataactccaaagtaatttgtctgaatgaattaaatgaacatcaaatgaacttagctttga 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28053245 gtggatcattttctcgctctgaagagactcgtggtaaagaataactccaaagtaatttgtctgaatgaattaaatgaacatcaaatgaacttagctttga 28053344  T
Q  321 aagtcattgatttggatgttctgcctatg 349  Q
    |||||||||||||||||||||||||||||    
T  28053345 aagtcattgatttggatgttctgcctatg 28053373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 21 - 349
Target Start/End: Original strand, 28063471 - 28063798
Alignment:
Q  21 ctcgtgatatcggttgagcatatcaacgggtcattataaatttggacatggcgtgtctaagtctggagaaattgtgagtttgaatcaacactctagtata 120  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28063471 ctcgtgatatcggttgagcatatcaacgggtcattataaatt-ggacatggcgtgtctaagtctggagaaattgtgagtttgaatcaacactctagtata 28063569  T
Q  121 tatatcaaataacttcacagccttttattatctctattgtacttacaggacattgttattctcatttcacattcatttattgcaggaattgagtgggatt 220  Q
    ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28063570 tatctcaaataacttcacagctttttattatctctattgtacttacaggacattgttattctcatttcacattcatttattgcaggaattgagtgggatt 28063669  T
Q  221 gtggatcattttctcgctctgaagagactcgtggtaaagaataactccaaagtaatttgtctgaatgaattaaatgaacatcaaatgaacttagctttga 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28063670 gtggatcattttctcgctctgaagagactcgtggtaaagaataactccaaagtaatttgtctgaatgaattaaatgaacatcaaatgaacttagctttga 28063769  T
Q  321 aagtcattgatttggatgttctgcctatg 349  Q
    |||||||||||||||||||||||||||||    
T  28063770 aagtcattgatttggatgttctgcctatg 28063798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 184 - 349
Target Start/End: Original strand, 28147266 - 28147440
Alignment:
Q  184 atttcacattcatttattgcaggaattgagtgggattgtggatcattttctcgctctgaagagactcgtggtaaagaataactccaaagta--------- 274  Q
    ||||| |||||||||||| |||||||||||||||| ||||||| ||||||||||| || |||||||| |||||| ||||||||||||||||             
T  28147266 atttcccattcatttattacaggaattgagtgggaatgtggataattttctcgctttggagagactcatggtaacgaataactccaaagtagaaagtatc 28147365  T
Q  275 atttgtctgaatgaattaaatgaacatcaaatgaacttagctttgaaagtcattgatttggatgttctgcctatg 349  Q
     |||||||||||||| |||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||    
T  28147366 ttttgtctgaatgaaataaatgaacagcaaatgaacttagctttggaagacattgatttggatgttctgcctatg 28147440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 184 - 349
Target Start/End: Original strand, 28081446 - 28081620
Alignment:
Q  184 atttcacattcatttattgcaggaattgagtgggattgtggatcattttctcgctctgaagagactcgtggtaaagaataactccaaagtaa-------- 275  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| | |||| ||| || ||| | ||||||||| |||||             
T  28081446 atttcccattcatttattgcaggaattgagtgggaatgtggatcattttctcgctttaaagaaacttgttgtatataataactccgaagtagaaagtatc 28081545  T
Q  276 -tttgtctgaatgaattaaatgaacatcaaatgaacttagctttgaaagtcattgatttggatgttctgcctatg 349  Q
     ||||||| |||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  28081546 gtttgtctcaatgaaataaatgaacagaaaatgaacttagctttgaaagtcattgatttggatgttctgcctatg 28081620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 194 - 346
Target Start/End: Original strand, 28131660 - 28131821
Alignment:
Q  194 catttattgcaggaattgagtgggattgtggatcattttctcgctctgaagagactcgtggtaaagaataactccaaagta---------atttgtctga 284  Q
    ||||| ||||||||||||||||||| |||||| ||||||||| || || |||||||| | |||||||||||||||||||||         |||||| | |    
T  28131660 catttgttgcaggaattgagtgggaatgtggaccattttctctctttggagagactcatagtaaagaataactccaaagtagaaagtatcatttgtataa 28131759  T
Q  285 atgaattaaatgaacatcaaatgaacttagctttgaaagtcattgatttggatgttctgcct 346  Q
    ||||| |||||||||| |||||||||||||||||||||| |||||||||||||||| |||||    
T  28131760 atgaaataaatgaacagcaaatgaacttagctttgaaagacattgatttggatgttttgcct 28131821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 184 - 349
Target Start/End: Complemental strand, 28511202 - 28511028
Alignment:
Q  184 atttcacattcatttattgcaggaattgagtgggattgtggatcattttctcgctctgaagagactcgtggtaaagaataactccaaagtaa-------- 275  Q
    ||||| ||||||||||||| ||||||  ||||||| | ||||| ||||||| ||| || ||| |||| ||||||| ||||||||||||||||            
T  28511202 atttcccattcatttattgtaggaatcaagtgggaatatggataattttctagctttggagacactcttggtaaataataactccaaagtaaaagatgtc 28511103  T
Q  276 -tttgtctgaatgaattaaatgaacatcaaatgaacttagctttgaaagtcattgatttggatgttctgcctatg 349  Q
     |||||||||||||| |||||||||| ||| ||| |||||||||||||| |||||||||| ||||| ||||||||    
T  28511102 ttttgtctgaatgaaataaatgaacaacaactgagcttagctttgaaagacattgatttgaatgttttgcctatg 28511028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 184 - 349
Target Start/End: Complemental strand, 28482390 - 28482216
Alignment:
Q  184 atttcacattcatttattgcaggaattgagtgggattgtggatcattttctcgctctgaagagactcgtggtaaagaataactccaaagtaa-------- 275  Q
    ||||| ||||||||||||| ||||||  ||||||| | ||||| ||||||| ||| || ||| |||| ||||||| |||||||||||||||             
T  28482390 atttcccattcatttattgtaggaatcaagtgggaatatggataattttctagctttggagacactcatggtaaataataactccaaagtagaagatgtc 28482291  T
Q  276 -tttgtctgaatgaattaaatgaacatcaaatgaacttagctttgaaagtcattgatttggatgttctgcctatg 349  Q
     |||||||||||||| |||||||||| ||| ||| ||||||||||||||  ||||||||| ||||||||||||||    
T  28482290 ttttgtctgaatgaaataaatgaacaacaactgagcttagctttgaaagaaattgatttgaatgttctgcctatg 28482216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 187
Target Start/End: Complemental strand, 17746870 - 17746738
Alignment:
Q  52 cattataaatttggacat-ggcgtgtctaagtctggagaaattgtgagtttgaatcaacactctagtatatatatcaaataacttcacagccttttat-t 149  Q
    ||||| |||||||||||| || ||||||||||   |||||| |||||||||||||||||||||| |    ||||||||||| ||||||| |||||||| |    
T  17746870 cattaaaaatttggacattggtgtgtctaagtagagagaaactgtgagtttgaatcaacactctcg----tatatcaaatatcttcacaaccttttatat 17746775  T
Q  150 atctctattgtacttacaggacattgttattctcattt 187  Q
    |||||||||||||||||| ||| |||||||||| ||||    
T  17746774 atctctattgtacttaca-gactttgttattcttattt 17746738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 187
Target Start/End: Complemental strand, 19048190 - 19048058
Alignment:
Q  52 cattataaatttggacat-ggcgtgtctaagtctggagaaattgtgagtttgaatcaacactctagtatatatatcaaataacttcacagccttttat-t 149  Q
    ||||| |||||||||||| || ||||||||||   |||||| |||||||||||||||||||||| |    ||||||||||| ||||||| |||||||| |    
T  19048190 cattaaaaatttggacattggtgtgtctaagtagagagaaactgtgagtttgaatcaacactctcg----tatatcaaatatcttcacaaccttttatat 19048095  T
Q  150 atctctattgtacttacaggacattgttattctcattt 187  Q
    |||||||||||||||||| ||| |||||||||| ||||    
T  19048094 atctctattgtacttaca-gactttgttattcttattt 19048058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 184 - 347
Target Start/End: Original strand, 27974250 - 27974422
Alignment:
Q  184 atttcacattcatttattgcaggaattgagtgggattgtggatcattttctcgctctgaagagactcgtggtaaagaataactccaaagta--------- 274  Q
    ||||| ||||| |||| || ||||||||||||||| |||||||||||||||||||   ||||| | ||||||||| |||||||||| ||||             
T  27974250 atttctcattcgtttactgtaggaattgagtgggaatgtggatcattttctcgcttctaagagtcccgtggtaaataataactccatagtagaaagtatt 27974349  T
Q  275 atttgtctgaatgaattaaatgaacatcaaatgaacttagctttgaaagtcattgatttggatgttctgccta 347  Q
     ||||||| |||||| |||||||||||||||||| || || |||| ||   ||||||||||||||||| ||||    
T  27974350 gtttgtctaaatgaaataaatgaacatcaaatgatctcaggtttggaaagaattgatttggatgttcttccta 27974422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 184 - 349
Target Start/End: Original strand, 27918075 - 27918249
Alignment:
Q  184 atttcacattcatttattgcaggaattgagtgggattgtggatcattttctcgctctgaagagactcgtggtaaagaataactccaaagtaa-------- 275  Q
    ||||| ||||| |||||| ||||| |||||||||| ||| || ||||||  |||| ||   |||||||||||||| |||||||||||||||             
T  27918075 atttcccattcgtttattacaggatttgagtgggaatgtcgagcattttagcgctttgggaagactcgtggtaaataataactccaaagtagaaagcatc 27918174  T
Q  276 -tttgtctgaatgaattaaatgaacatcaaatgaacttagctttgaaagtcattgatttggatgttctgcctatg 349  Q
     ||||||| |||||| |||||||||| |||||||| |||| |||| || ||||| ||||| ||||||||||||||    
T  27918175 ttttgtctcaatgaaataaatgaacaacaaatgaaattaggtttggaattcatttatttgaatgttctgcctatg 27918249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 285 - 349
Target Start/End: Original strand, 28183577 - 28183641
Alignment:
Q  285 atgaattaaatgaacatcaaatgaacttagctttgaaagtcattgatttggatgttctgcctatg 349  Q
    ||||| |||||||||  |||||||||||||||||| ||| |||||||||||||||||||||||||    
T  28183577 atgaaataaatgaacggcaaatgaacttagctttggaagacattgatttggatgttctgcctatg 28183641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 28183391 - 28183456
Alignment:
Q  122 atatcaaataacttcacagccttttattatctctattgtacttacaggacattgttattctcattt 187  Q
    |||||||||| || |||||||| |||| ||||||||||||||||||| || |||||||||| ||||    
T  28183391 atatcaaatatctccacagcctattatcatctctattgtacttacagaactttgttattcttattt 28183456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 349
Target Start/End: Original strand, 28002018 - 28002076
Alignment:
Q  291 taaatgaacatcaaatgaacttagctttgaaagtcattgatttggatgttctgcctatg 349  Q
    |||||||||| ||||||||||||||||||||| | ||||| |||  |||||||||||||    
T  28002018 taaatgaacaacaaatgaacttagctttgaaaattattgaattgcttgttctgcctatg 28002076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 349
Target Start/End: Complemental strand, 17746623 - 17746550
Alignment:
Q  276 tttgtctgaatgaattaaatgaacatcaaatgaacttagctttgaaagtcattgatttggatgttctgcctatg 349  Q
    ||||||| ||||||  ||||||||| |||||||||||||||||| |||  |||  ||||| |||||||||||||    
T  17746623 tttgtctcaatgaaagaaatgaacagcaaatgaacttagctttggaagaaattattttgggtgttctgcctatg 17746550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 349
Target Start/End: Complemental strand, 19047943 - 19047870
Alignment:
Q  276 tttgtctgaatgaattaaatgaacatcaaatgaacttagctttgaaagtcattgatttggatgttctgcctatg 349  Q
    ||||||| ||||||  ||||||||| |||||||||||||||||| |||  |||  ||||| |||||||||||||    
T  19047943 tttgtctcaatgaaagaaatgaacagcaaatgaacttagctttggaagaaattattttgggtgttctgcctatg 19047870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 28183470 - 28183518
Alignment:
Q  184 atttcacattcatttattgcaggaattgagtgggattgtggatcatttt 232  Q
    ||||| ||||||||||||||||||||||||||||| ||| || ||||||    
T  28183470 atttcccattcatttattgcaggaattgagtgggaatgtcgaacatttt 28183518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 184 - 349
Target Start/End: Original strand, 17052 - 17227
Alignment:
Q  184 atttcacattcatttattgcaggaattgagtgggattgtggatcattttctcgctctgaagagactcgtggtaaagaataactccaaagtaa-------- 275  Q
    ||||| |||||||||||||||| |||  ||||||| | ||||| ||||||||||| || |||||||| | |||||||||||||||||||||             
T  17052 atttcccattcatttattgcagcaatctagtgggaatatggataattttctcgctttggagagactcattgtaaagaataactccaaagtagaaagtatc 17151  T
Q  276 -tttgtctgaatgaattaaatgaacatcaaatgaacttagctttgaaagtcattgatttggatgtt-ctgcctatg 349  Q
     |||||||||||||| |||||||||| |||||||||||||||||||||  |||||||||||||||| |||||||||    
T  17152 ttttgtctgaatgaaataaatgaacagcaaatgaacttagctttgaaatacattgatttggatgttcctgcctatg 17227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 284 - 349
Target Start/End: Complemental strand, 8693781 - 8693716
Alignment:
Q  284 aatgaattaaatgaacatcaaatgaacttagctttgaaagtcattgatttggatgttctgcctatg 349  Q
    |||||| |||||||||| |||||||||||||||||| |  | ||||||||||||||||| ||||||    
T  8693781 aatgaaataaatgaacagcaaatgaacttagctttggagtttattgatttggatgttcttcctatg 8693716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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