View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20685_high_2 (Length: 815)
Name: NF20685_high_2
Description: NF20685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20685_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 575; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 13 - 798
Target Start/End: Complemental strand, 27991954 - 27991172
Alignment:
| Q |
13 |
gagatgggtcgcaacggagctgctgcagagattggagatggatcgcaatgaaactgtttttggtttgatttggattttggagtgaaatgaatca-tttga |
111 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27991954 |
gagatgggtagcaacggagctgctgcagagattggagatggatcgcaatgaaactgtttttggtttgatttggattttggagtgaaatgaatcaatttga |
27991855 |
T |
|
| Q |
112 |
ttaagttttaatgttagggttcaatcactggcttttgttcaatttgggttatgttcagttttggnnnnnnncnnnnnnnga-ggttaggttaataagtgc |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| | | |||||||||||||||||| |
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| T |
27991854 |
ttaagttttaatgttagggttcaatcactggcttttgttcaatttgagttaagttcagttttggtttttttcaaaaaaaaaaggttaggttaataagtgc |
27991755 |
T |
|
| Q |
211 |
tcctttaagcaaggatcggatcaaaacttttacataccggtttggttcaatatcaatttggttcagttcgattcaannnnnnnnnnnnnngtgcacccct |
310 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||| ||| |||| |||||||||| |||||||||||||||| || | ||||| |
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| T |
27991754 |
tcctttaagcaaggatcggatcaaagcttttacataccagttcggtttaatatcaattcggttcagttcgattcagtttttagtttttttgtcctcccct |
27991655 |
T |
|
| Q |
311 |
aatatgtataagagttcaatagaactcacaaaccaaagtatactgtgatcatgcactattttcaatttattttcccatccacaaaaattgttttttagta |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27991654 |
aatatgtataagagttcaatagaactcacaaaccaaagtatactatgatcatgcactattttcaatttattttcccatccacaaaaattgttttttagta |
27991555 |
T |
|
| Q |
411 |
gaatgcaagtaaccttttattatgcatatccaaatgtagatatctttttcgagtttgaagcactaatcacataattaaataattgaagcactactggcat |
510 |
Q |
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| T |
27991554 |
gaatgcaagtaaccttttattatgcatatccaaatgtagatatctttttcgagtttgaagcactaatgacataattaaataattgaagcactactggcat |
27991455 |
T |
|
| Q |
511 |
gattaaataagagaagctagttgatagatatgctctataatgaatttaattccattaattaggatacatgctatggaattatgtttcacaagtgttatgt |
610 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27991454 |
aattaaataagagaatgtagttgatagatatgctctataatgaatttaattccattaattaggatacatgctatggaattatgtttcacaagtgttatgt |
27991355 |
T |
|
| Q |
611 |
ttctaatcattaattatgatacagatcagaaaacagctccagcaaataacgaactcttctccaactgtttctacaattgccttctttcaaaggtataatt |
710 |
Q |
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| T |
27991354 |
ttctaatcattaattatgatacaaatcagaaaacagctccagcaaataacgaactcttctccaactgtttctacagttgccttcttccaaaggtataatt |
27991255 |
T |
|
| Q |
711 |
aatcaactgcttttaaagttactgaatcttttctcttcaatcaaattcaataattgccttatctttatatgtgttattgaattgtgta |
798 |
Q |
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| T |
27991254 |
aatcaactgcttttaaagttagtgaatcttttcttttcaatcaaattc---aattgccttatctt--tatgtgttattgaattgtgta |
27991172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 304 - 498
Target Start/End: Complemental strand, 28001708 - 28001514
Alignment:
| Q |
304 |
cacccctaatatgtataagagttcaatagaactcacaaaccaaagtatactgtgatcatgcactattttcaatttattttcccatccacaaaaattgttt |
403 |
Q |
| |
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|||||||||| |||||| |||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28001708 |
cacccctaatttgtatatgagttcggtagaactcgcaaaccaaagtatactatgatcatgcactattttcaatttattttcccatccacaaaaattgatt |
28001609 |
T |
|
| Q |
404 |
tttagtagaatgcaagtaaccttttattatgcatatccaaatgtagatatctttttcgagtttgaagcactaatcaca---taattaaataattgaag |
498 |
Q |
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| || ||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
28001608 |
t---gttgaatgcaagtaactttttattgtgcatatccatatgtagatatctttatcgagtttgaagcactaatgacatagtaattaaataattgaag |
28001514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 530 - 659
Target Start/End: Complemental strand, 28001513 - 28001384
Alignment:
| Q |
530 |
gttgatagatatgctctataatgaatttaattccattaattaggatacatgctatggaattatgtttcacaagtgttatgtttctaatcattaattatga |
629 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28001513 |
gttgatagatatgctcttggatgaatttaattccattaattaggatacatgctatggaattatgtttcacaagtgttttgtttctaatcattaattatga |
28001414 |
T |
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| Q |
630 |
tacagatcagaaaacagctccagcaaataa |
659 |
Q |
| |
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|||| |||||||||| | |||||||||| |
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| T |
28001413 |
tacaattcagaaaacaacctcagcaaataa |
28001384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 673 - 798
Target Start/End: Complemental strand, 28001344 - 28001224
Alignment:
| Q |
673 |
aactgtttctacaattgccttctttcaaaggtataattaatcaactgcttttaaagttactgaatcttttctcttcaatcaaattcaataattgccttat |
772 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||| ||||||||||||||| || |||||||| |
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| T |
28001344 |
aactgtttctacaattgccttctttcaaaggta--attaatcatctgcttttaaagttagtgaatcttttatcttcaatcaaattc---aagtgccttat |
28001250 |
T |
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| Q |
773 |
ctttatatgtgttattgaattgtgta |
798 |
Q |
| |
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||||| |||||||||||||||||||| |
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| T |
28001249 |
ctttaaatgtgttattgaattgtgta |
28001224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 4e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 69 - 285
Target Start/End: Complemental strand, 24004222 - 24004008
Alignment:
| Q |
69 |
tttttggtttgatttggattttggagtgaaatgaatc-atttgattaagttttaatgttagggttcaatcactggcttttgttcaatttgggttatgttc |
167 |
Q |
| |
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||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||| ||| |||| |
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| T |
24004222 |
ttttttgtttgatttagattttggagtgaaatgaatttatttgattaagttttaatgttagggttcaatcactgttttttgttcaacttggattaagttc |
24004123 |
T |
|
| Q |
168 |
agttttggnnnnnnncnnnnnnngaggttaggttaataagtgctcctttaagcaaggatcggatcaaaacttttacataccggtttggttcaatatcaat |
267 |
Q |
| |
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|||||||| | ||||| ||||||||| || || ||||| | ||||||| ||||||||||||||| |||||| |||||||||||||| |
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| T |
24004122 |
agttttggtttttttcaaaaa---aggttcggttaataactggtcgtttaaatatggatcggttcaaaacttttacatgccggttcggttcaatatcaat |
24004026 |
T |
|
| Q |
268 |
ttggttcagttcgattca |
285 |
Q |
| |
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| ||||||||||| |||| |
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| T |
24004025 |
tcggttcagttcggttca |
24004008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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