View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20685_high_28 (Length: 250)
Name: NF20685_high_28
Description: NF20685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20685_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 49082694 - 49082441
Alignment:
| Q |
1 |
cgttgagcatgaatttgaatacagtgctaactgaatcttgagaagacatcactgcaaattacatttacatacatgatgtaatgaggaaacatgaagaagg |
100 |
Q |
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| T |
49082694 |
cgttgagcatgaatttgaatacagtgctaactgaatcttgagaagacatcactgcaaattacatttacatacatgatgtaatgaggaaacatgaagaagg |
49082595 |
T |
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| Q |
101 |
aagttatttaattagttcagacataa--------------------catacttatgagaggaatgtttttgcaatagtgatggtccatgatttgggtaag |
180 |
Q |
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| T |
49082594 |
aagttatttaattagttcagacataacataacataacataacataacatacttatgagaggaatgtttttgcaattgtgatggtccatgatttgggtaag |
49082495 |
T |
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| Q |
181 |
taatgaaaaaccagagattgatggtagatcgacttctgttaatacgagatctat |
234 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
49082494 |
taatgaaaaaccagagattgatgggagatcgacttctgttaatacgagatctat |
49082441 |
T |
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