View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20685_high_31 (Length: 248)
Name: NF20685_high_31
Description: NF20685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20685_high_31 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 20059782 - 20059676
Alignment:
| Q |
1 |
tattaagagatgcacattttattccttttgaccacatgttcctatttttatggttagtcaaaggttagtgcctacttcagtaacagtttttgttagccta |
100 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||| |||| | ||||||||||||| |
|
|
| T |
20059782 |
tattaagagattcttattttattccttttgaccacatgttcctattattatgattagtcaaaggttagtacctacttcactaaccggttttgttagccta |
20059683 |
T |
|
| Q |
101 |
tgagaat |
107 |
Q |
| |
|
||||||| |
|
|
| T |
20059682 |
tgagaat |
20059676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 13010931 - 13010827
Alignment:
| Q |
1 |
tattaagagatgcacattttattccttttgaccacatgttcctatttttatggttagtcaaaggttagtgcctacttcagtaacagtttttgttagccta |
100 |
Q |
| |
|
||||||||||| | |||| |||| || | |||||||||||||||| |||||||||||||||||||||||||||||| | |||| | |||||||| |||| |
|
|
| T |
13010931 |
tattaagagatccttatttcattctttgtaaccacatgttcctattattatggttagtcaaaggttagtgcctactttactaactggttttgttaaccta |
13010832 |
T |
|
| Q |
101 |
tgaga |
105 |
Q |
| |
|
||||| |
|
|
| T |
13010831 |
tgaga |
13010827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 132
Target Start/End: Complemental strand, 26705511 - 26705393
Alignment:
| Q |
15 |
cattttattccttttgaccacatgttcctatttttatggttagtcaaaggttagtgcctacttcagtaacagttt-ttgttagcctatgagaatggacat |
113 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||| || ||||||||||||||| ||| | |
|
|
| T |
26705511 |
cattttattcattttgaccacatgttcctattattatggttagtcaaaggttagtgcctacttcgttaaccgtttcttcttagcctatgagaattgactt |
26705412 |
T |
|
| Q |
114 |
tgcttgctatatatttaca |
132 |
Q |
| |
|
||| ||| |||||| |||| |
|
|
| T |
26705411 |
tgcctgccatatatataca |
26705393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 132
Target Start/End: Complemental strand, 26975244 - 26975126
Alignment:
| Q |
15 |
cattttattccttttgaccacatgttcctatttttatggttagtcaaaggttagtgcctacttcagtaacagttt-ttgttagcctatgagaatggacat |
113 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||| || ||||||||||||||| ||| | |
|
|
| T |
26975244 |
cattttattcattttgaccacatgttcctattattatggttagtcaaaggttagtgcctacttcgttaaccgtttcttcttagcctatgagaattgactt |
26975145 |
T |
|
| Q |
114 |
tgcttgctatatatttaca |
132 |
Q |
| |
|
||| ||| |||||| |||| |
|
|
| T |
26975144 |
tgcctgccatatatataca |
26975126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 39291740 - 39291818
Alignment:
| Q |
1 |
tattaagagatgcacattttattccttttgaccacatgttcctatttttatggttagtcaaaggttagtgcctacttca |
79 |
Q |
| |
|
||||||||||| | ||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39291740 |
tattaagagatccttattctatttcttttgaccacatgttcctattattatggttagtcaaaggttagtgcctacttca |
39291818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 26711089 - 26710982
Alignment:
| Q |
1 |
tattaagagatgcacattttattccttttgaccacatgttcctatttttatggttagtcaaaggttagtgcctacttcagtaacagttt-ttgttagcct |
99 |
Q |
| |
|
||||||||||| |||||||||| |||||| |||||| ||||||| |||||| | |||||||| |||||| |||||||||||| |||| |||||||||| |
|
|
| T |
26711089 |
tattaagagatattcattttattcattttgatcacatggtcctattattatggctggtcaaaggctagtgcttacttcagtaaccgtttcttgttagcct |
26710990 |
T |
|
| Q |
100 |
atgagaat |
107 |
Q |
| |
|
|||||||| |
|
|
| T |
26710989 |
atgagaat |
26710982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 26980826 - 26980719
Alignment:
| Q |
1 |
tattaagagatgcacattttattccttttgaccacatgttcctatttttatggttagtcaaaggttagtgcctacttcagtaacagttt-ttgttagcct |
99 |
Q |
| |
|
||||||||||| |||||||||| |||||| |||||| ||||||| |||||| | |||||||| |||||| |||||||||||| |||| |||||||||| |
|
|
| T |
26980826 |
tattaagagatattcattttattcattttgatcacatggtcctattattatggctggtcaaaggctagtgcttacttcagtaaccgtttcttgttagcct |
26980727 |
T |
|
| Q |
100 |
atgagaat |
107 |
Q |
| |
|
|||||||| |
|
|
| T |
26980726 |
atgagaat |
26980719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 5435265 - 5435139
Alignment:
| Q |
1 |
tattaagagatgcacattttattccttttgaccacatgttcctatttttatggttagtcaaaggttagtgcctacttcagtaacagtttttgttagccta |
100 |
Q |
| |
|
||||||| ||| | ||||||||||| ||||| ||||||||| |||| | || |||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
5435265 |
tattaagtgatactcattttattccctttgaacacatgttcatattactttgattagtcaaaggttagtgcctacttcattaacggtttttgttagccta |
5435166 |
T |
|
| Q |
101 |
tgagaatggacattgcttgctatatat |
127 |
Q |
| |
|
| ||||| |||||| ||||||||||| |
|
|
| T |
5435165 |
tacgaatgaacattgtttgctatatat |
5435139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 21189096 - 21189200
Alignment:
| Q |
1 |
tattaagagatgcacattttattccttttgaccacatgttcctatttttatggttagtcaaaggttagtgcctacttcagtaacagtttttgttagccta |
100 |
Q |
| |
|
||||||||||| || ||||||||| || | |||||||||||||||| |||||||||||||||||||||||||||||| | |||| | |||||||| |||| |
|
|
| T |
21189096 |
tattaagagatccatattttattctttgtaaccacatgttcctattattatggttagtcaaaggttagtgcctactttactaactgattttgttaaccta |
21189195 |
T |
|
| Q |
101 |
tgaga |
105 |
Q |
| |
|
||||| |
|
|
| T |
21189196 |
tgaga |
21189200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University