View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20685_high_39 (Length: 208)
Name: NF20685_high_39
Description: NF20685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20685_high_39 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 26 - 189
Target Start/End: Complemental strand, 53105424 - 53105261
Alignment:
| Q |
26 |
taatgggaagcaagtcaactattgaagggaagttaaaaaataataccagttcatcaatatgcagtgaaagtgtatcacgtgaagaggtttgcttgctagg |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53105424 |
taatgggaagcaagtcaactattgaagggaagttaaaaaataataccagttcatcaatatgcagtgaaagtgtatcacgtgaagaggtttgcttgctagg |
53105325 |
T |
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| Q |
126 |
agaggatatgaattttcaaccaagccaagccagaataagagcagatggacaagaatgaaacatc |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53105324 |
agaggatatgaattttcaaccaagccaagccagaataagagcagatggacaagaatgaaacatc |
53105261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 26 - 146
Target Start/End: Complemental strand, 43918144 - 43918024
Alignment:
| Q |
26 |
taatgggaagcaagtcaactattgaagggaagttaaaaaataataccagttcatcaatatgcagtgaaagtgtatcacgtgaagaggtttgcttgctagg |
125 |
Q |
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|||||||||| |||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||| |||| |
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| T |
43918144 |
taatgggaagtaagtcaactattgaagggcagttcaaaaataataccagttcatcagtatgcagtgaaagtgtatcacataaagaggtttgcttactaga |
43918045 |
T |
|
| Q |
126 |
agaggatatgaattttcaacc |
146 |
Q |
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||||||||| | ||||||||| |
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| T |
43918044 |
agaggatataagttttcaacc |
43918024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 189
Target Start/End: Complemental strand, 43918002 - 43917968
Alignment:
| Q |
155 |
ccagaataagagcagatggacaagaatgaaacatc |
189 |
Q |
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||||||||||||||||||||||||||||| ||||| |
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| T |
43918002 |
ccagaataagagcagatggacaagaatgacacatc |
43917968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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