View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20685_high_4 (Length: 598)
Name: NF20685_high_4
Description: NF20685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20685_high_4 |
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| [»] scaffold0090 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 551; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 12 - 594
Target Start/End: Original strand, 28426465 - 28427046
Alignment:
| Q |
12 |
atgaagaggatccatcttcaggagatgtgattcaaattatggtgcttacaagtaatccagaaagcgtaatattgaaggggtcgactaaaatccataggac |
111 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28426465 |
atgaagaggatccatcttcaggagatgtaattcaaattatggtgcttacaagtaatccagaaagcgtaatattgaagggctcgactaaaatccataggac |
28426564 |
T |
|
| Q |
112 |
aggaccatggaatgctccgtcaagtggagtagtcggattgaaacctaatccactttatgattttgtatttgtcaacaacgaagatgaagtgtattataga |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28426565 |
aggaccatggaatgctccgtcaagtggagtagtcggattgaaacctaatccactttatgattttgtatttgtcaacaacgaagatgaagtgtattataga |
28426664 |
T |
|
| Q |
212 |
tacacgctgaagaatagttctgtgatctctatagtgattgtcaaccaaaccctagcaattcgacaacgtctcctttatgttcccgaatcaaaaacatgga |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28426665 |
tacacgctgaagaatagttctgtgatctctatagtgattgtcaaccaaaccctagcaattcgacaacgtctcctttatgttcccgaatcaaaaacatgga |
28426764 |
T |
|
| Q |
312 |
gtgtttaccaaacaacgccattggatgcttgtgattattacaacgtttgtggagcaaatgcacaatgcatcattgatggatcgccaatgtgtcaatgttt |
411 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28426765 |
gtgttta-caaacaacgccattggatgcttgtgattattacaacgtttgtggggcaaatgcacaatgcatcattgatggatcgccaatgtgtcaatgttt |
28426863 |
T |
|
| Q |
412 |
acttggatttaagccaaaatcaccggaacaatggaattcaatggactggacacaaggatgtgtgcttagtggaaattggagttgtgggatcaaaaaccaa |
511 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
28426864 |
acttggatttaagccaaaatcaccggaacaatggaattcaatggactggacacaaggatgtgtgcgtagtggaaattggagttgtgggatcaaaaaccaa |
28426963 |
T |
|
| Q |
512 |
gatggctttcaaaaatttgttgggatgaaatttccaaatactacaaattcttggattaatcgaaacatgacacttaatgattg |
594 |
Q |
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| T |
28426964 |
gatggctttcaaaaatttgttgggatgaaatttccaaatactacaaattcttggattaatcgaaacacgacacttaacgattg |
28427046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 57 - 586
Target Start/End: Original strand, 28417977 - 28418506
Alignment:
| Q |
57 |
ttacaagtaatccagaaagcgtaatattgaaggggtcgactaaaatccataggacaggaccatggaatgctccgtcaagtggagtagtcggattgaaacc |
156 |
Q |
| |
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||||||| ||||| |||||| | |||| |||||| || ||||||||| |||| | |||||||||||| ||| || |||||||| |||||| ||||||| |
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| T |
28417977 |
ttacaagcaatcccgaaagcatgatatggaagggctcaactaaaatctgtaggtctggaccatggaatcctctctctagtggagttgtcggaatgaaacc |
28418076 |
T |
|
| Q |
157 |
taatccactttatgattttgtatttgtcaacaacgaagatgaagtgtattatagatacacgctgaagaatagttctgtgatctctatagtgattgtcaac |
256 |
Q |
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|| || |||||||||| | | |||||||||| ||||| ||||||||||| || | ||| | |||||| || || | |||||||| | | ||||| |
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| T |
28418077 |
caacccgctttatgattataaagttgtcaacaatgaagacgaagtgtattaccaattcgtgctcaggaatagctccgttacctctatagcggtactcaac |
28418176 |
T |
|
| Q |
257 |
caaaccctagcaattcgacaacgtctcctttatgttcccgaatcaaaaacatggagtgtttaccaaacaacgccattggatgcttgtgattattacaacg |
356 |
Q |
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||||||||| ||||| ||||| || |||||||||| ||||| |||| |||||| |||||||||| | ||||| |||| ||||||| |||||||| | |
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| T |
28418177 |
caaaccctattgattcgtcaacgccttgtttatgttcctgaatccaaaatatggagcgtttaccaaatcatgccatcggatacttgtgaatattacaatg |
28418276 |
T |
|
| Q |
357 |
tttgtggagcaaatgcacaatgcatcattgatggatcgccaatgtgtcaatgtttacttggatttaagccaaaatcaccggaacaatggaattcaatgga |
456 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||| |
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| T |
28418277 |
tttgtggagcaaatgcacaatgcacgattgatggatcgccaatgtgtcaatgtttacctggatttaagccaaaatcaccacagcaatggaattcaatgga |
28418376 |
T |
|
| Q |
457 |
ctggacacaaggatgtgtgcttagtggaaattggagttgtgggatcaaaaaccaagatggctttcaaaaatttgttgggatgaaatttccaaatactaca |
556 |
Q |
| |
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|||||| ||||||||||||| ||||||||||||| |||||||| ||||||| |||||| ||||| ||||||||| ||||||| || || |||| ||| |
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| T |
28418377 |
ctggacgcaaggatgtgtgcgcggtggaaattggagctgtgggattaaaaaccgagatgggtttcagaaatttgttaggatgaagttacccgatacaaca |
28418476 |
T |
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| Q |
557 |
aattcttggattaatcgaaacatgacactt |
586 |
Q |
| |
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|||||||||||||||| ||||||||||||| |
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| T |
28418477 |
aattcttggattaatctaaacatgacactt |
28418506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 356 - 591
Target Start/End: Complemental strand, 22691695 - 22691460
Alignment:
| Q |
356 |
gtttgtggagcaaatgcacaatgcatcattgatggatcgccaatgtgtcaatgtttacttggatttaagccaaaatcaccggaacaatggaattcaatgg |
455 |
Q |
| |
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|||||||||||||||| | | ||||||||||| ||||||| || |||| ||||||| ||||||||| |||||||||| |||| |||||| ||| |
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| T |
22691695 |
gtttgtggagcaaatggatattgcatcattgaaggatcgcaaacatgtcgatgtttagatggatttaaaccaaaatcacttgaactgtggaatagcttgg |
22691596 |
T |
|
| Q |
456 |
actggacacaaggatgtgtgcttagtggaaattggagttgtgggatcaaaaaccaagatggctttcaaaaatttgttgggatgaaatttccaaatactac |
555 |
Q |
| |
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|||||| ||||||||| |||| | |||||||||||||||||| ||||||| || || |||| |||||| |||| |||||||||||| |||| || |
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| T |
22691595 |
actggaaacaaggatgcgtgcgcaacggaaattggagttgtggggtcaaaaatagggacggatttcgtaaatttattggaatgaaatttccagatacaac |
22691496 |
T |
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| Q |
556 |
aaattcttggattaatcgaaacatgacacttaatga |
591 |
Q |
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|||||||||||||||| ||||||||||||| |||| |
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| T |
22691495 |
aaattcttggattaatgcaaacatgacacttgatga |
22691460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 330 - 444
Target Start/End: Complemental strand, 28434554 - 28434439
Alignment:
| Q |
330 |
cattggatgcttgtgattattacaacgtttgtggagcaaatgcacaatgcatcattgatggatcgccaatgtgtcaatgtttacttggattt-aagccaa |
428 |
Q |
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|||||||||||||| || |||||| |||| | | ||| |||||| |||||||||||||||||| ||||| ||||||||||||| ||||||| ||||||| |
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| T |
28434554 |
cattggatgcttgtaatatttacaatgtttatagggcacatgcacgatgcatcattgatggatcaccaatttgtcaatgtttacgtggatttaaagccaa |
28434455 |
T |
|
| Q |
429 |
aatcaccggaacaatg |
444 |
Q |
| |
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||||||| ||||||| |
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| T |
28434454 |
aatcaccacaacaatg |
28434439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0090 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 376 - 594
Target Start/End: Complemental strand, 9815 - 9597
Alignment:
| Q |
376 |
atgcatcattgatggatcgccaatgtgtcaatgtttacttggatttaagccaaaatcaccggaacaatggaattcaatggactggacacaaggatgtgtg |
475 |
Q |
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|||||| ||| ||| |||||| ||||||| |||||| ||| |||| || ||||| || |||| |||| | |||||||||||||||||||||||||| |
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| T |
9815 |
atgcatgattaatgcatcgcccatgtgtcggtgtttagatgggtttataccgaaatcgccacaacagtggagtgcaatggactggacacaaggatgtgtg |
9716 |
T |
|
| Q |
476 |
cttagtggaaattggagttgtgggatcaaaaaccaagatggctttcaaaaatttgttgggatgaaatttccaaatactacaaattcttggattaatcgaa |
575 |
Q |
| |
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| || | | ||||||||||||||||||||| || ||| || ||| | ||| || ||| |||||||| ||| |||||| ||||||||||| || | |
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| T |
9715 |
cgtaatagtaattggagttgtgggatcaaagacagagacgggtttaagaaaattactggaatgaaattaccagatactatgcattcttggattgatgaga |
9616 |
T |
|
| Q |
576 |
acatgacacttaatgattg |
594 |
Q |
| |
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| ||||||||| ||||||| |
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| T |
9615 |
aaatgacacttgatgattg |
9597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 419 - 498
Target Start/End: Original strand, 23552419 - 23552498
Alignment:
| Q |
419 |
tttaagccaaaatcaccggaacaatggaattcaatggactggacacaaggatgtgtgcttagtggaaattggagttgtgg |
498 |
Q |
| |
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|||||||| |||||||| |||| |||||| |||||||||||||||||||||| |||| | |||||||||| |||||| |
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| T |
23552419 |
tttaagccgaaatcacctcaacagtggaatgcaatggactggacacaaggatgcgtgcgaggcggaaattggacttgtgg |
23552498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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